| line |
true |
false |
branch |
|
114
|
1 |
0 |
unless (defined $Bio::Tools::Run::Eponine::PROGRAMDIR) |
|
117
|
0 |
1 |
if (defined $Bio::Tools::Run::Eponine::PROGRAMDIR) |
|
120
|
0 |
0 |
if (-e $f and -x $f) |
|
127
|
0 |
1 |
if ($ENV{'EPONINEDIR'}) |
|
128
|
0 |
0 |
if (-d $ENV{'EPONINEDIR'}) { } |
|
|
0 |
0 |
elsif (-e $ENV{'EPONINEDIR'}) { } |
|
133
|
0 |
0 |
unless (-e $Bio::Tools::Run::Eponine::EPOJAR) |
|
155
|
0 |
0 |
unless $Bio::Tools::Run::Eponine::OK_FIELD{$attr} |
|
156
|
0 |
0 |
if @_ |
|
180
|
0 |
0 |
if $attr =~ /^-/ |
|
181
|
0 |
0 |
if ($attr =~ /JAVA/i) |
|
185
|
0 |
0 |
if ($attr =~ /EPOJAR/i) |
|
189
|
0 |
0 |
if ($attr =~ /THRESHOLD/i) |
|
193
|
0 |
0 |
if ($attr =~ /SEQ/i) |
|
204
|
0 |
0 |
unless defined $seq |
|
205
|
0 |
0 |
unless defined $threshold |
|
206
|
0 |
0 |
if (not defined $epojar and defined $Bio::Tools::Run::Eponine::EPOJAR) { } |
|
210
|
0 |
0 |
unless defined $epojar |
|
212
|
0 |
0 |
if (not defined $java and defined $Bio::Tools::Run::Eponine::PROGRAM) { } |
|
216
|
0 |
0 |
unless defined $java |
|
218
|
0 |
0 |
if $seq |
|
220
|
0 |
0 |
if (-x $java) |
|
225
|
0 |
0 |
if defined $epojar |
|
227
|
0 |
0 |
if (defined $threshold and $threshold >= 0) { } |
|
250
|
0 |
0 |
if (defined $exe) |
|
254
|
0 |
0 |
unless (defined $self->{'_pathtojava'}) |
|
255
|
0 |
0 |
if ($Bio::Tools::Run::Eponine::PROGRAM and -e $Bio::Tools::Run::Eponine::PROGRAM and -x $Bio::Tools::Run::Eponine::PROGRAM) { } |
|
259
|
0 |
0 |
if ($exe = $self->io->exists_exe($Bio::Tools::Run::Eponine::PROGRAMNAME) and -x $exe) { } |
|
263
|
0 |
0 |
if $warn |
|
283
|
0 |
0 |
if ($location) |
|
285
|
0 |
0 |
unless ($location) |
|
308
|
0 |
0 |
if (defined $threshold) |
|
359
|
0 |
0 |
unless (ref $seq) |
|
388
|
0 |
0 |
unless (defined $java and -e $java and -x $java) |
|
392
|
0 |
0 |
unless (defined $epojar) |
|
393
|
0 |
0 |
unless (-e $epojar) |
|
398
|
0 |
0 |
if system $cmd |