| blib/lib/Bio/Tools/Run/StandAloneBlastPlus.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 0 | 68 | 0.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 589 | 0 | 0 | 0 | defined $self->check_db and $self->check_db == 0 |
| 0 | 0 | 0 | defined $self->check_db and $self->check_db == 0 and not $self->is_remote | |
| 719 | 0 | 0 | 0 | $self->check_db and not $self->overwrite |
| 763 | 0 | 0 | 0 | $self->masker and $self->mask_data |
| 950 | 0 | 0 | 0 | $db eq $self->db and $self->{'_db_info'} |
| 1162 | 0 | 0 | 0 | ref $_ eq 'ARRAY' and ref $data->[0] |
| 0 | 0 | 0 | ref $_ eq 'ARRAY' and ref $data->[0] and $data->[0]->isa('Bio::Seq') || $data->[0]->isa('Bio::PrimarySeq') | |
| 1299 | 0 | 0 | 0 | $self_file ne '' and $_ =~ /$self_file$/ |
| 1358 | 0 | 0 | 0 | $self->factory and $self->factory->can($method) |
| 1361 | 0 | 0 | 0 | $self->db_info and grep /^$method$/, keys %{$self->db_info;} |
| line | l | !l | condition |
|---|---|---|---|
| 1096 | 0 | 0 | $d || '.' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 533 | 0 | 0 | 0 | $program_dir ||= $prog_dir |
| 546 | 0 | 0 | 0 | not $d or -d $d |
| 554 | 0 | 0 | 0 | not $d or -d $d |
| 574 | 0 | 0 | 0 | $self->{'_program_dir'} || $Bio::Tools::Run::BlastPlus::program_dir |
| 590 | 0 | 0 | 0 | $create or $overwrite |
| 734 | 0 | 0 | 0 | $self->{'_db'} ||= $name |
| 744 | 0 | 0 | 0 | my $usr_db_args ||= $self->db_make_args |
| 809 | 0 | 0 | 0 | $masker ||= $self->masker |
| 812 | 0 | 0 | 0 | my $usr_make_args ||= $self->mask_make_args |
| 941 | 0 | 0 | 0 | $db ||= $self->db_path |
| 1162 | 0 | 0 | 0 | $data->[0]->isa('Bio::Seq') || $data->[0]->isa('Bio::PrimarySeq') |
| 1201 | 0 | 0 | 0 | $data->isa('Bio::Seq') or $data->isa('Bio::PrimarySeq') |