| line |
true |
false |
branch |
|
149
|
1 |
0 |
if $args{'TARGET'} |
|
152
|
0 |
1 |
if defined $args{'COORDS'} |
|
156
|
0 |
1 |
if defined $args{'WSIZE'} |
|
157
|
0 |
1 |
if defined $args{'CUTOFF'} |
|
158
|
0 |
1 |
if defined $args{'CUTOFF'} |
|
179
|
0 |
0 |
if ($target) |
|
187
|
0 |
3 |
if $ENV{'MDUSTDIR'} |
|
200
|
0 |
0 |
unless my $target = $self->target |
|
207
|
0 |
0 |
if defined $self->wsize |
|
208
|
0 |
0 |
if defined $self->cutoff |
|
209
|
0 |
0 |
if defined $self->maskchar |
|
210
|
0 |
0 |
if $self->coords |
|
211
|
0 |
0 |
if $self->debug |
|
222
|
0 |
0 |
if $@ |
|
226
|
0 |
0 |
if ($self->coords) { } |
|
235
|
0 |
0 |
unless $self->save_tempfiles |
|
257
|
1 |
0 |
if ($targobj) { } |
|
270
|
0 |
1 |
unless ($targobj->isa('Bio::SeqI') or $targobj->isa('Bio::PrimarySeqI')) |
|
277
|
0 |
1 |
if ($self->coords) { } |
|
|
1 |
0 |
elsif ($targobj->isa('Bio::Seq::RichSeqI')) { } |
|
278
|
0 |
0 |
unless ($targobj->isa('Bio::Seq::RichSeqI')) |
|
289
|
0 |
1 |
unless ($targobj->alphabet eq 'dna') |
|
304
|
0 |
0 |
if ($file) { } |
|
|
0 |
0 |
elsif (not $self->{'maskedfile'}) { } |
|
319
|
0 |
0 |
unless open FILE, $file |
|
350
|
0 |
0 |
unless defined $maskchar |
|
352
|
0 |
0 |
unless (grep {$maskchar eq $_;} @Bio::Tools::Run::Mdust::MASKCHARS) |
|
364
|
1 |
0 |
unless ($self->save_tempfiles) |
|
376
|
0 |
2 |
if $name eq 'DESTROY' |
|
379
|
1 |
1 |
if (defined $value) |
|
383
|
0 |
2 |
unless (exists $self->{$name}) |
|
384
|
0 |
0 |
if $self->debug |