| blib/lib/Bio/Tools/Run/Infernal.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 4 | 78 | 5.1 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 383 | 1 | 0 | 0 | $o1 and $o2 |
| 513 | 0 | 0 | 0 | ref $seq[0] and $seq[0]->isa('Bio::PrimarySeqI') |
| 0 | 0 | 0 | ref $seq[0] and $seq[0]->isa('Bio::Align::AlignI') | |
| 539 | 0 | 0 | 0 | ref $seq[0] and $seq[0]->isa('Bio::PrimarySeqI') |
| 611 | 0 | 0 | 0 | ref $seq[0] and $seq[0]->isa('Bio::Align::AlignI') |
| 703 | 0 | 0 | 0 | $type eq 'switch' && $val |
| 852 | 0 | 0 | 0 | $seqs and ref $seqs eq 'ARRAY' |
| 0 | 0 | 0 | $aligns and ref $aligns eq 'ARRAY' | |
| 868 | 0 | 0 | 0 | not defined $model and $prog ne 'cmbuild' |
| 921 | 0 | 0 | 0 | $self->quiet and $prog ne 'cmsearch' |
| 983 | 0 | 0 | 0 | $prog eq 'cmemit' && $has{'a'} |
| 995 | 0 | 0 | 0 | $obj and ref $obj |
| 1002 | 0 | 0 | 0 | $obj and ref $obj |
| 1014 | 0 | 0 | 0 | $obj and ref $obj |
| line | l | !l | condition |
|---|---|---|---|
| 391 | 0 | 1 | $out ||= '' |
| 472 | 0 | 3 | 'Bio::Root::IO'->catfile($ENV{'INFERNALDIR'}) || '' |
| 497 | 0 | 0 | $v || undef |
| 814 | 0 | 0 | $option ||= '' |
| 872 | 0 | 0 | $outfile ||= '' |
| 1015 | 0 | 0 | $obj || 1 |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 386 | 0 | 0 | 1 | $o1 || $o2 |
| 851 | 0 | 0 | 0 | $seqs or $aligns |
| 852 | 0 | 0 | 0 | $seqs and ref $seqs eq 'ARRAY' or $aligns and ref $aligns eq 'ARRAY' |
| 883 | 0 | 0 | 0 | $prog eq 'cmscore' or $prog eq 'cmstat' |
| 0 | 0 | 0 | $prog eq 'cmscore' or $prog eq 'cmstat' or $prog eq 'cmcalibrate' | |
| 894 | 0 | 0 | 0 | not defined $aligns or @$aligns < 2 |
| 990 | 0 | 0 | 0 | $status or not -e $out |
| 0 | 0 | 0 | $status or not -e $out or -z $out |