| blib/lib/Bio/Tools/Run/AssemblerBase.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 16 | 27 | 59.2 |
| pod | 9 | 9 | 100.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 78 | 8 | n/a | BEGIN |
| 79 | 8 | n/a | BEGIN |
| 80 | 8 | n/a | BEGIN |
| 82 | 8 | n/a | BEGIN |
| 97 | 71 | Yes | program_name |
| 114 | 41 | Yes | program_dir |
| 134 | 0 | Yes | out_type |
| 157 | 9 | n/a | _assembly_format |
| 177 | 1 | n/a | _assembly_variant |
| 196 | 0 | n/a | _check_executable |
| 218 | 0 | n/a | _check_sequence_input |
| 251 | 0 | n/a | _check_optional_quality_input |
| 288 | 0 | n/a | _prepare_input_files |
| 333 | 0 | n/a | _write_seq_file |
| 399 | 0 | n/a | _prepare_output_file |
| 428 | 0 | n/a | _export_results |
| 492 | 1 | n/a | _register_program_commands |
| 515 | 11 | n/a | _set_program_options |
| 586 | 1 | n/a | _translate_params |
| 680 | 0 | n/a | _prepare_input_sequences |
| 697 | 0 | n/a | _collate_subcmd_args |
| 741 | 0 | Yes | run |
| 787 | 3 | Yes | set_parameters |
| 817 | 1 | Yes | reset_parameters |
| 864 | 265 | Yes | parameters_changed |
| 882 | 3 | Yes | available_parameters |
| 918 | 1 | Yes | get_parameters |