| blib/lib/Bio/Tools/Run/AssemblerBase.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 8 | 39 | 20.5 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 296 | 0 | 0 | 0 | defined $quals and not ref($quals) =~ /ARRAY/i |
| 307 | 0 | 0 | 0 | defined $quals and ref($quals) =~ /ARRAY/i |
| 926 | 0 | 0 | 0 | $self->can($_) and defined $self->$_ |
| 932 | 0 | 0 | 0 | $self->can($_) and defined $self->$_ |
| 938 | 0 | 5 | 4 | $self->can($_) and defined $self->$_ |
| line | l | !l | condition |
|---|---|---|---|
| 596 | 1 | 0 | $dash ||= 1 |
| 701 | 0 | 0 | $cmd ||= 'run' |
| 920 | 0 | 1 | $subset ||= 'all' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 225 | 0 | 0 | 0 | $seq->isa('Bio::PrimarySeqI') or $seq->isa('Bio::SeqI') |
| 255 | 0 | 0 | 0 | $qual->isa('Bio::Seq::QualI') or $qual->isa('Bio::Seq::Quality') |
| 402 | 0 | 0 | 0 | $out_type eq 'Bio::Assembly::ScaffoldI' || $out_type eq 'Bio::Assembly::IO' |
| 436 | 0 | 0 | 0 | $out_type eq 'Bio::Assembly::ScaffoldI' || $out_type eq 'Bio::Assembly::IO' |
| 518 | 2 | 0 | 9 | $args{'-command'} || $args{'command'} |
| 887 | 1 | 0 | 2 | not defined $_ or /^a/ |