| line |
count |
pod |
subroutine |
|
79
|
1 |
n/a |
BEGIN |
|
80
|
1 |
n/a |
BEGIN |
|
81
|
1 |
n/a |
BEGIN |
|
82
|
1 |
n/a |
BEGIN |
|
83
|
1 |
n/a |
BEGIN |
|
84
|
1 |
n/a |
BEGIN |
|
90
|
1 |
n/a |
BEGIN |
|
93
|
1 |
n/a |
BEGIN |
|
96
|
25 |
n/a |
_initialize |
|
125
|
15 |
Yes |
next_seq |
|
281
|
11 |
n/a |
_get_v3_quality |
|
308
|
11 |
n/a |
_get_v3_peak_indices |
|
327
|
11 |
n/a |
_get_v3_base_accuracies |
|
361
|
15 |
n/a |
_get_comments |
|
399
|
15 |
n/a |
_get_header |
|
434
|
4 |
n/a |
_parse_v2_bases |
|
470
|
4 |
n/a |
_parse_v2_traces |
|
489
|
0 |
No |
get_trace_deprecated_use_the_sequencetrace_object_instead |
|
501
|
0 |
n/a |
_deprecated_get_peak_indices_deprecated_use_the_sequencetrace_object_instead |
|
519
|
1 |
Yes |
get_header |
|
535
|
1 |
Yes |
get_comments |
|
540
|
0 |
n/a |
_dump_traces_outgoing_deprecated_use_the_sequencetrace_object |
|
561
|
0 |
n/a |
_dump_traces_incoming_deprecated_use_the_sequencetrace_object |
|
610
|
10 |
Yes |
write_seq |
|
779
|
10 |
n/a |
_get_binary_header |
|
814
|
10 |
n/a |
_get_binary_traces |
|
871
|
10 |
n/a |
_get_binary_bases |
|
949
|
0 |
n/a |
_make_trace_string |
|
991
|
10 |
n/a |
_get_binary_comments |
|
1052
|
80 |
n/a |
_delta |
|
1132
|
0 |
n/a |
_unpack_magik |
|
1156
|
100 |
Yes |
read_from_buffer |
|
1197
|
0 |
n/a |
_dump_keys |
|
1220
|
0 |
n/a |
_dump_base_accuracies |
|
1247
|
0 |
n/a |
_dump_peak_indices_incoming |
|
1268
|
0 |
n/a |
_dump_base_accuracies_incoming |
|
1295
|
0 |
n/a |
_dump_comments |