| line |
true |
false |
branch |
|
83
|
67 |
29 |
unless $primary |
|
85
|
96 |
0 |
unless defined $self->strand |
|
228
|
0 |
509 |
unless ($fea->isa('Bio::SeqFeature::Gene::ExonI')) |
|
286
|
0 |
1 |
unless $#exons > 0 |
|
291
|
1 |
0 |
if $strand |
|
293
|
1 |
0 |
$exons[0]->end < $exons[1]->start ? : |
|
297
|
1 |
0 |
if (not defined $strand or $strand != -1 or not $rev_order) { } |
|
312
|
0 |
3 |
if $self->entire_seq |
|
334
|
11 |
20 |
if ($fea) |
|
441
|
8 |
1 |
if $self->poly_A_site |
|
470
|
0 |
0 |
if (not $fea_only) |
|
507
|
0 |
4 |
unless @exons |
|
511
|
5 |
35 |
if (defined $exon->strand and not $strand) |
|
514
|
0 |
40 |
if ($exon->strand and $exon->strand * $strand < 0) |
|
520
|
0 |
4 |
unless $cds |
|
546
|
0 |
0 |
if $seq |
|
574
|
0 |
1 |
unless ($seq) |
|
590
|
1 |
0 |
if ($self->poly_A_site) |
|
593
|
0 |
1 |
if $seq->length == 0 |
|
603
|
0 |
0 |
$type ? : |
|
614
|
2 |
38 |
unless defined $exon->seq and $exon->is_coding |
|
617
|
37 |
1 |
if (not defined $exon->frame or $phase == $exon->frame) { } |
|
625
|
0 |
1 |
unless $seq |
|
628
|
0 |
1 |
if ($phase > 0) |
|
631
|
0 |
0 |
if ($seq =~ /^(n+)/i) |
|
634
|
0 |
0 |
if ($n_crop >= $phase) { } |
|
662
|
0 |
254 |
unless $self->{'_features'} |
|
679
|
0 |
0 |
unless $self->{'_features'} |
|
687
|
773 |
370 |
if ($_->isa($type)) |
|
688
|
35 |
738 |
if ($pri and not $_->primary_tag =~ /$pri/i) |
|
710
|
0 |
0 |
if (defined $list[$_] and $list[$_]->isa($type)) |
|
712
|
0 |
0 |
if ($pri and not $list[$_]->primary_tag =~ /$pri/i) |
|
731
|
0 |
531 |
unless ($fea->isa('Bio::SeqFeatureI')) |
|
734
|
382 |
149 |
if (not $fea->isa($type) or $pri) |
|
737
|
87 |
444 |
if (not $self->strand) { } |
|
740
|
0 |
444 |
if ($self->strand * $fea->strand == -1) |
|
746
|
0 |
0 |
if (defined $self->entire_seq and not defined $fea->entire_seq and $fea->can('attach_seq')) |
|
750
|
0 |
531 |
if (defined $self->parent) |
|
761
|
64 |
14 |
if ($fea->strand) |
|
763
|
30 |
34 |
unless $strand |
|
764
|
0 |
64 |
if ($fea->strand * $strand < 0) |
|
770
|
20 |
27 |
if (defined $strand and $strand == -1) { } |
|
780
|
363 |
19 |
if ($pri) { } |