Subroutine Coverage
| Bio/Search/HSP/GenericHSP.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
50 |
50 |
100.0
|
| pod |
35 |
35 |
100.0
|
| line |
count |
pod |
subroutine |
|
117
|
27 |
n/a |
BEGIN |
|
119
|
27 |
n/a |
BEGIN |
|
120
|
27 |
n/a |
BEGIN |
|
122
|
27 |
n/a |
BEGIN |
|
176
|
1331 |
Yes |
new |
|
217
|
313 |
n/a |
_logical_length |
|
242
|
7397 |
Yes |
algorithm |
|
264
|
63 |
Yes |
pvalue |
|
283
|
170 |
Yes |
evalue |
|
309
|
602 |
Yes |
frac_identical |
|
351
|
440 |
Yes |
frac_conserved |
|
384
|
3125 |
Yes |
gaps |
|
414
|
610 |
Yes |
query_string |
|
438
|
618 |
Yes |
hit_string |
|
464
|
6905 |
Yes |
homology_string |
|
491
|
8 |
Yes |
consensus_string |
|
518
|
9 |
Yes |
posterior_string |
|
549
|
3839 |
Yes |
length |
|
579
|
16 |
Yes |
hsp_length |
|
593
|
84 |
Yes |
percent_identity |
|
633
|
610 |
Yes |
frame |
|
677
|
19 |
Yes |
get_aln |
|
737
|
1914 |
Yes |
num_conserved |
|
761
|
1923 |
Yes |
num_identical |
|
784
|
4514 |
Yes |
rank |
|
836
|
194 |
Yes |
seq_inds |
|
931
|
6 |
Yes |
ambiguous_seq_inds |
|
955
|
5590 |
Yes |
query |
|
963
|
6939 |
Yes |
feature1 |
|
986
|
4390 |
Yes |
hit |
|
994
|
4408 |
Yes |
feature2 |
|
1020
|
19 |
Yes |
significance |
|
1043
|
587 |
Yes |
strand |
|
1088
|
205 |
n/a |
_calculate_seq_positions |
|
1244
|
107 |
n/a |
_calculate_seq_offsets |
|
1265
|
113 |
Yes |
n |
|
1278
|
1659 |
Yes |
range |
|
1309
|
54 |
Yes |
links |
|
1328
|
12 |
Yes |
hsp_group |
|
1348
|
6 |
Yes |
hit_features |
|
1405
|
8 |
Yes |
cigar_string |
|
1427
|
7 |
Yes |
generate_cigar_string |
|
1459
|
1924 |
n/a |
_sub_cigar_string |
|
1476
|
1177 |
n/a |
_pre_seq_feature |
|
1516
|
1176 |
n/a |
_query_seq_feature |
|
1594
|
562 |
n/a |
_subject_seq_feature |
|
1665
|
438 |
n/a |
_pre_similar_stats |
|
1693
|
105 |
n/a |
_pre_frac |
|
1728
|
378 |
n/a |
_pre_gaps |
|
1762
|
42 |
n/a |
_pre_pi |