| line |
true |
false |
branch |
|
116
|
1 |
7 |
if $s1 != 0 and $s1 == $s2 |
|
123
|
4 |
4 |
if $s1 == 0 or $s2 == 0 or $s1 == $s2 |
|
135
|
12971 |
10 |
unless $comp |
|
225
|
0 |
44 |
unless defined $self->start |
|
226
|
0 |
44 |
unless defined $self->end |
|
227
|
0 |
44 |
unless defined $other and $other->isa('Bio::RangeI') |
|
229
|
0 |
44 |
unless defined $other->start |
|
230
|
0 |
44 |
unless defined $other->end |
|
254
|
0 |
8288 |
unless defined $self->start |
|
255
|
0 |
8288 |
unless defined $self->end |
|
257
|
8288 |
0 |
if (defined $other and ref $other) { } |
|
258
|
0 |
8288 |
unless $other->isa('Bio::RangeI') |
|
259
|
0 |
8288 |
unless defined $other->start |
|
260
|
0 |
8288 |
unless defined $other->end |
|
266
|
0 |
0 |
unless $other =~ /^[-+]?\d+$/ |
|
285
|
0 |
0 |
unless defined $self->start |
|
286
|
0 |
0 |
unless defined $self->end |
|
287
|
0 |
0 |
unless $other->isa('Bio::RangeI') |
|
288
|
0 |
0 |
unless defined $other->start |
|
289
|
0 |
0 |
unless defined $other->end |
|
323
|
1 |
4437 |
unless $given |
|
326
|
0 |
4437 |
if ($self eq 'Bio::RangeI') |
|
330
|
4436 |
1 |
if (ref $self) |
|
333
|
3 |
4434 |
ref $given eq 'ARRAY' ? : |
|
336
|
0 |
4437 |
unless @ranges >= 2 |
|
340
|
4437 |
3 |
unless ($intersect) |
|
342
|
0 |
4437 |
unless ref $intersect |
|
343
|
0 |
4437 |
unless $intersect->isa('Bio::RangeI') |
|
344
|
0 |
4437 |
unless defined $intersect->start |
|
345
|
0 |
4437 |
unless defined $intersect->end |
|
349
|
0 |
4440 |
unless ref $compare |
|
350
|
0 |
4440 |
unless $compare->isa('Bio::RangeI') |
|
351
|
0 |
4440 |
unless defined $compare->start |
|
352
|
0 |
4440 |
unless defined $compare->end |
|
353
|
0 |
4440 |
unless $compare->_testStrand($intersect, $so) |
|
362
|
4284 |
156 |
if (defined $intersect->strand and defined $compare->strand and $intersect->strand == $compare->strand) { } |
|
369
|
109 |
4331 |
if ($start > $end) { } |
|
379
|
4 |
4324 |
if (wantarray) { } |
|
406
|
0 |
21337 |
if ($self eq 'Bio::RangeI') |
|
410
|
21336 |
1 |
if (ref $self) |
|
429
|
21354 |
21322 |
if (not defined $union_strand) { } |
|
433
|
467 |
20855 |
if (not defined $_->strand or $union_strand ne $_->strand) |
|
439
|
0 |
21337 |
unless $start or $end |
|
440
|
17083 |
4254 |
if (wantarray) { } |
|
467
|
0 |
0 |
unless defined $a->start |
|
468
|
0 |
0 |
unless defined $a->end |
|
469
|
0 |
0 |
unless $b->isa('Bio::RangeI') |
|
470
|
0 |
0 |
unless defined $b->start |
|
471
|
0 |
0 |
unless defined $b->end |
|
473
|
0 |
0 |
unless ($a->overlaps($b)) |
|
478
|
0 |
0 |
if ($a->start < $b->start) { } |
|
484
|
0 |
0 |
if ($a->end > $b->end) { } |
|
491
|
0 |
0 |
if (not $intersect) { } |
|
516
|
0 |
2080 |
if ($self eq 'Bio::RangeI') |
|
521
|
0 |
2080 |
if (ref $self) |
|
543
|
4250 |
39 |
if ($intersection) { } |
|
556
|
4250 |
2083 |
if (@intersecting_ranges) { } |
|
557
|
0 |
4250 |
if (@intersecting_ranges > 1) { } |
|
597
|
2 |
2 |
$self->strand eq -1 ? : |
|
619
|
1 |
6 |
unless $range |
|
621
|
2 |
4 |
unless $self->_testStrand($range, $so) |
|
623
|
0 |
4 |
if ($self eq 'Bio::RangeI') |
|
628
|
0 |
4 |
unless $range->isa('Bio::RangeI') |
|
632
|
1 |
3 |
if ($self->location->isa('Bio::Location::SplitLocationI')) { } |
|
640
|
1 |
5 |
unless ($sl->overlaps($range)) |
|
650
|
1 |
4 |
if ($range->contains($sl)) |
|
657
|
3 |
1 |
if ($sl->start < $start) |
|
664
|
2 |
2 |
if ($sl->end > $end) |
|
673
|
3 |
1 |
if (@outranges) |