Subroutine Coverage

Bio/PopGen/HtSNP.pm
Criterion Covered Total %
subroutine 40 46 86.9
pod 17 19 89.4


line count pod subroutine
310 1 n/a BEGIN
311 1 n/a BEGIN
313 1 n/a BEGIN
314 1 n/a BEGIN
317 1 n/a BEGIN
341 1 Yes new
392 3 Yes haplotype_block
409 4 Yes snp_ids
427 3 Yes pattern_freq
447 1 n/a _check_input
471 1 n/a _haplotype_length_error
532 1 n/a _population_error
619 1 n/a _do_it
784 0 Yes input_block
803 1 Yes hap_length
823 0 Yes pop_freq
843 1 Yes deg_snp
863 0 Yes snp_type
884 1 Yes silent_snp
906 1 Yes useful_snp
928 1 Yes ht_type
949 0 No ht_set
969 1 Yes snp_type_code
991 0 Yes snp_and_code
1013 1 Yes deg_pattern
1034 0 Yes split_hap
1052 1 n/a _split_haplo
1083 1 n/a _to_upper_case
1109 1 n/a _remove_deg
1148 1 n/a _rem_silent_snp
1187 1 n/a _find_silent_snps
1230 1 n/a _find_indet
1272 2 n/a _remove_col
1295 2 n/a _remove_snp_id
1315 1 n/a _find_deg_pattern
1347 3 n/a _key_for_value
1359 7 n/a _is_on_hash
1372 45 n/a _is_there
1398 2 n/a _keep_these_patterns
1431 18 Yes compare_arrays
1456 1 n/a _convert_to_numbers
1515 1 n/a _snp_type_code
1539 20 No get_position
1568 1 n/a _alleles_number
1607 1 n/a _htSNP
1661 1 n/a _snp_and_code_summary