| line |
true |
false |
branch |
|
159
|
1 |
138 |
unless defined $self->{'_value'} |
|
163
|
1 |
137 |
unless defined $1 |
|
169
|
2 |
135 |
if $chr eq 'X' |
|
170
|
0 |
137 |
if $chr eq 'Y' |
|
176
|
95 |
42 |
if (defined $3) |
|
177
|
0 |
95 |
unless $2 |
|
181
|
57 |
80 |
if (defined $6) { } |
|
|
33 |
47 |
elsif (defined $4 and $4 ne '') { } |
|
|
27 |
20 |
elsif (defined $3) { } |
|
|
15 |
5 |
elsif (defined $2) { } |
|
183
|
7 |
50 |
if $4 eq '' |
|
189
|
14 |
43 |
if ($band ne '' and (defined $arm2 and $2 ne $arm2 and $arm2 eq 'q')) { } |
|
|
17 |
26 |
elsif ($band ne 'ter' and $2 ne $arm2 and $arm2 eq 'p') { } |
|
|
2 |
24 |
elsif ($band eq 'ter' and $arm2 eq 'p') { } |
|
|
11 |
13 |
elsif ($arm2 eq 'q') { } |
|
|
13 |
0 |
elsif ($arm2 eq 'p') { } |
|
201
|
11 |
0 |
if (_pad($band, 5, '0') < _pad($band2, 5, '0')) { } |
|
210
|
13 |
0 |
if (_pad($band, 5, '0') < _pad($band2, 5, '0')) { } |
|
223
|
32 |
25 |
if (defined $arm2 and $arm2 eq 'p' or defined $arm2 and $arm2 eq 'p') { } |
|
225
|
2 |
30 |
if (defined $3 and $3 eq 'ter') { } |
|
|
8 |
22 |
elsif ($2 eq 'cen' or $2 eq 'qcen' or $2 eq 'pcen') { } |
|
|
9 |
13 |
elsif ($2 eq 'q') { } |
|
239
|
3 |
22 |
if ($2 eq 'cen' or $2 eq 'pcen') { } |
|
|
14 |
8 |
elsif ($2 eq 'p') { } |
|
243
|
0 |
14 |
if ($3 eq 'ter') { } |
|
258
|
4 |
29 |
if ($4 eq 'cen' or $4 eq 'qcen' or $4 eq 'pcen') { } |
|
|
15 |
14 |
elsif ($4 eq 'qter' or $4 eq 'ter') { } |
|
|
13 |
1 |
elsif ($4 eq 'pter') { } |
|
261
|
3 |
1 |
if ($2 eq 'p') { } |
|
|
0 |
1 |
elsif ($2 eq 'cen') { } |
|
262
|
0 |
3 |
if ($3 eq 'ter') { } |
|
276
|
6 |
9 |
if ($2 eq 'p') { } |
|
|
3 |
6 |
elsif ($2 eq 'q') { } |
|
|
6 |
0 |
elsif ($2 eq 'cen' or $2 eq 'qcen' or $2 eq 'pcen') { } |
|
289
|
8 |
5 |
if ($2 eq 'p') { } |
|
|
0 |
5 |
elsif ($2 eq 'q') { } |
|
|
5 |
0 |
elsif ($2 eq 'cen' or $2 eq 'qcen' or $2 eq 'pcen') { } |
|
306
|
13 |
14 |
if ($2 eq 'p') { } |
|
|
13 |
1 |
elsif ($2 eq 'q') { } |
|
307
|
3 |
10 |
if ($3 eq 'ter') { } |
|
317
|
6 |
7 |
if ($3 eq 'ter') { } |
|
334
|
6 |
9 |
if ($2 eq 'p') { } |
|
|
3 |
6 |
elsif ($2 eq 'q') { } |
|
358
|
134 |
0 |
if ($r) |
|
368
|
1 |
205 |
unless $len =~ /^\+?\d+$/ |
|
370
|
1 |
204 |
unless length $pad_char == 1 |
|
389
|
16 |
0 |
if (defined $value) |
|
390
|
0 |
16 |
unless ($value->isa('Bio::Range')) |
|
394
|
0 |
16 |
unless ($value->start) |
|
398
|
0 |
16 |
unless ($value->end) |
|
402
|
0 |
16 |
if ($value->start < 100000) |
|
406
|
0 |
16 |
if ($value->end < 100000) |
|
419
|
0 |
16 |
if ($chr == 100) { } |
|
|
0 |
16 |
elsif ($chr == 100) { } |
|
427
|
1 |
2 |
if $arm == 0 and $arm2 == 2 and $band == 0 and $band2 == 0 |
|
431
|
9 |
6 |
if ($arm == $arm2) { } |
|
432
|
4 |
5 |
if ($arm == 0) { } |
|
|
1 |
4 |
elsif ($arm == 2) { } |
|
435
|
2 |
2 |
if $band == 0 |
|
440
|
1 |
0 |
if $band == 0 |
|
444
|
2 |
2 |
if $band == 0 |
|
447
|
5 |
1 |
if ($arm == 0) { } |
|
450
|
1 |
4 |
if $band == 0 and $band2 == 0 |
|
454
|
1 |
0 |
if $arm2 == 2 and $band == 0 and $band2 == 0 |
|
457
|
5 |
10 |
if $band == $band2 |
|
462
|
9 |
1 |
if ($bandS ne 'ter') |
|
463
|
6 |
3 |
if ($armS eq 'p') { } |
|
471
|
5 |
4 |
if length $band > 2 |
|
473
|
0 |
10 |
unless $band2 |
|
477
|
3 |
7 |
if ($arm2 == 0) { } |
|
485
|
3 |
7 |
if ($band2 == 0) |
|
486
|
1 |
2 |
if ($arm2 == 1) { } |
|
494
|
0 |
7 |
if $band eq $band2 and $arm == $arm2 |
|
498
|
3 |
4 |
if length $band2 > 2 |
|
502
|
4 |
12 |
if ($armS eq 'p' and $arm2S eq 'p') |
|
507
|
6 |
10 |
if $bandS eq $band2S |
|
508
|
1 |
15 |
if $bandS eq 'cen' |
|
509
|
5 |
11 |
if $armS eq $arm2S and $band2S ne 'ter' |
|
510
|
8 |
8 |
if $arm2S or $band2S |
|
528
|
63 |
152 |
if (defined $value) |
|
563
|
139 |
3 |
if (defined $chr) |