| Bio/AlignIO/stockholm.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 37 | 44 | 84.0 |
| line | l | !l | condition |
|---|---|---|---|
| 398 | 9 | 8 | $self->{'block_line'} &&= 0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 437 | 25 | 485 | 193 | exists $MAPPING{$feat} and ref $MAPPING{$feat} eq 'ARRAY' |
| 445 | 376 | 101 | 8 | $align and $name eq 'ACCESSION' |
| 477 | 4 | 4 | $align and $name eq 'ACCESSION' and not $self->alphabet | |
| 469 | 108 | 9 | 586 | $isa_primary and defined $data_chunk |
| 117 | 41 | 545 | $isa_primary and defined $data_chunk and not $concat | |
| 518 | 0 | 0 | 2 | $aln and $aln->isa('Bio::Align::AlignI') |
| 643 | 0 | 0 | 2 | $self->_flush_on_write and defined $self->_fh |
| 698 | 0 | 0 | 7 | ref $handler and $handler->isa('Bio::HandlerBaseI') |
| line | l | !l | condition |
|---|---|---|---|
| 429 | 386 | 317 | $primary_tag ||= '' |
| 430 | 309 | 394 | $align ||= 0 |
| 627 | 2 | 0 | $aln->max_metaname_length || 0 |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 415 | 59 | 2 | 325 | $primary_tag eq 'GS' or $primary_tag eq 'GR' |
| 420 | 307 | 2 | 77 | $primary_tag eq 'GF' || $primary_tag eq 'GR' |
| 478 | 317 | 2 | 384 | $name eq 'SEQUENCE' or $name eq 'NAMED_META' |
| 319 | 18 | 366 | $name eq 'SEQUENCE' or $name eq 'NAMED_META' or $name eq 'CONSENSUS_META' |