| line |
true |
false |
branch |
|
111
|
436 |
74 |
if (not $in_align_sec) { } |
|
|
59 |
15 |
elsif ($line =~ /^(\S+)\s+([+-]?)\s+(\d+)\s+
\S+\s+[.A-Z\-]*\s+([A-Z\-]+)\s+
([.A-Z\-]*)/xi or $line =~ /^(\S+)\s+([+-]?)\s+(\d+)\s+
\S+\s+\.\s+([A-Z\-]+)/xi) { } |
|
|
12 |
3 |
elsif ($line =~ /^\-/ or $line =~ /Sequence name/) { } |
|
|
3 |
0 |
elsif ($line =~ /^\s*$/) { } |
|
114
|
3 |
433 |
if ($line =~ /^\s*MEME\s+version\s+(\S+)/) |
|
117
|
0 |
3 |
unless $vers >= 3 |
|
122
|
0 |
436 |
if ($line =~ /\/i) |
|
127
|
3 |
433 |
if ($line =~ /MOTIF\s+\d+\s+width.+E-value = (\S+)/) |
|
129
|
0 |
3 |
unless $self->{'seen_header'} |
|
134
|
3 |
433 |
if ($line =~ /sites sorted by position/) |
|
136
|
0 |
3 |
unless $self->{'seen_header'} |
|
151
|
1 |
58 |
$2 eq '-' ? : |
|
197
|
0 |
3 |
unless $self->{'seen_header'} |
|
199
|
3 |
0 |
if ($good_align_sec) |