| Bio/Align/PairwiseStatistics.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 20 | 38 | 52.6 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 101 | 0 | 0 | 8 | defined $aln && $aln->isa('Bio::Align::AlignI') |
| 126 | 0 | 0 | 2 | defined $aln && $aln->isa('Bio::Align::AlignI') |
| 165 | 0 | 0 | 10 | defined $aln && $aln->isa('Bio::Align::AlignI') |
| 207 | 0 | 0 | 4 | defined $aln && $aln->isa('Bio::Align::AlignI') |
| 216 | 0 | 4 | 0 | $seq1->alphabet eq 'dna' || $seq1->alphabet eq 'rna' and $seq2->alphabet eq 'dna' || $seq2->alphabet eq 'rna' |
| 238 | 26 | 54 | 0 | $res1 eq '-' && $res2 eq '-' |
| 243 | 0 | 0 | 0 | $prevres1 eq '-' and $prevres2 eq '-' |
| line | l | !l | condition |
|---|---|---|---|
| 220 | 2 | 2 | $match ||= 2 |
| 221 | 2 | 2 | $mismatch ||= -3 |
| 222 | 2 | 2 | $gap_open ||= -5 |
| 223 | 2 | 2 | $gap_ext ||= -2 |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 216 | 4 | 0 | 0 | $seq1->alphabet eq 'dna' || $seq1->alphabet eq 'rna' |
| 4 | 0 | 0 | $seq2->alphabet eq 'dna' || $seq2->alphabet eq 'rna' | |
| 230 | 54 | 26 | 686 | $res1 eq '-' || $res2 eq '-' |