| line |
true |
false |
branch |
|
155
|
9 |
0 |
if ($trees) |
|
156
|
0 |
9 |
if (not ref($trees) =~ /ARRAY/i) { } |
|
165
|
6 |
3 |
if ($pos_sites) |
|
166
|
0 |
6 |
if (not ref($pos_sites) =~ /ARRAY/i) { } |
|
170
|
0 |
8 |
unless (ref($s) =~ /ARRAY/i) |
|
178
|
6 |
3 |
if ($beb_sites) |
|
179
|
0 |
6 |
if (not ref($beb_sites) =~ /ARRAY/i) { } |
|
183
|
0 |
9 |
unless (ref($s) =~ /ARRAY/i) |
|
191
|
6 |
3 |
if ($neb_sites) |
|
192
|
0 |
6 |
if (not ref($neb_sites) =~ /ARRAY/i) { } |
|
196
|
0 |
8 |
unless (ref($s) =~ /ARRAY/i) |
|
205
|
7 |
2 |
if defined $modelnum |
|
206
|
7 |
2 |
if defined $modeldesc |
|
207
|
9 |
0 |
if defined $kappa |
|
208
|
7 |
2 |
if defined $timeused |
|
209
|
9 |
0 |
if defined $likelihood |
|
212
|
8 |
1 |
if (defined $dnds_classes) |
|
213
|
0 |
8 |
if (not ref($dnds_classes) =~ /HASH/i && defined $dnds_classes->{'p'} && defined $dnds_classes->{'w'}) { } |
|
221
|
3 |
6 |
if (defined $shape_params) |
|
222
|
0 |
3 |
if (not ref($shape_params) =~ /HASH/i) { } |
|
245
|
7 |
7 |
if @_ |
|
263
|
7 |
5 |
if @_ |
|
280
|
7 |
0 |
if @_ |
|
297
|
9 |
6 |
if @_ |
|
314
|
9 |
8 |
if @_ |
|
333
|
8 |
4 |
if @_ |
|
355
|
0 |
1 |
unless $_[0]{'_posselsites'} |
|
396
|
0 |
1 |
unless $_[0]{'_NEBposselsites'} |
|
440
|
0 |
0 |
unless $_[0]{'_BEBposselsites'} |
|
492
|
0 |
2 |
unless $self->{'_trees'} |
|
522
|
9 |
0 |
if ($tree and ref $tree and $tree->isa('Bio::Tree::TreeI')) |
|
543
|
3 |
1 |
if @_ |
|
560
|
9 |
6 |
if @_ |