| line |
!l |
l&&!r |
l&&r |
condition |
|
556
|
34 |
43 |
1 |
$lineno == 1 && $line =~ /^[[:upper:]]*BLAST[[:upper:]]*.*\[.*\]$/ |
|
569
|
78 |
0 |
0 |
$line =~ /^[[:graph:]]+\t[-+]\t[[:graph:]]+\t\d+\t([[:alpha:]]+)\t([[:graph:]]+)\t\d+\t[[:graph:]]?/ && length $1 == length $2 |
|
582
|
34 |
38 |
6 |
$lineno == 1 && $line =~ /CLUSTAL/ |
|
609
|
72 |
5 |
1 |
$lineno == 1 && $line =~ /^ID / && $line =~ /BP\.$/ |
|
784
|
34 |
43 |
1 |
$lineno == 1 && $line =~ /^#NEXUS/ |
|
810
|
34 |
43 |
1 |
$lineno == 1 && $line =~ /^#mega$/ |
|
894
|
72 |
4 |
2 |
$lineno == 1 && $line =~ /^ID / && $line =~ /\d+ seq\.$/ |
|
966
|
72 |
3 |
3 |
$lineno == 1 && $line =~ /^ID / && $line =~ /AA\.$/ |
|
978
|
34 |
42 |
2 |
$lineno == 1 && $line =~ /^[^\t]+\t[^\t]+/ |
| line |
l |
!l&&r |
!l&&!r |
condition |
|
594
|
0 |
0 |
78 |
$lineno == 1 && $line =~ /^ENTRY/ || $lineno == 2 && $line =~ /^SEQUENCE/ || $line =~ m[^(?:ENTRY|SEQUENCE|///)] |
|
621
|
0 |
7 |
71 |
$lineno != 1 && $line =~ /^[A-IK-NP-Z]+$/i || $line =~ /^>\s*\w/ |
|
634
|
2 |
0 |
76 |
$lineno == 1 && $line =~ /^@/ || $lineno == 3 && $line =~ /^\+/ |
|
647
|
0 |
0 |
78 |
$lineno == 1 && $line =~ /^ FAST(?:XY|A)/ || $lineno == 2 && $line =~ /^ version \d/ |
|
684
|
1 |
0 |
77 |
$lineno == 1 && $line =~ /^!!SEQUENCE_LIST/ || $lineno == 2 && $line =~ /^[[:upper:]]*BLAST[[:upper:]]*.*\[.*\]$/ |
|
698
|
1 |
0 |
77 |
$lineno == 1 && $line =~ /^!!SEQUENCE_LIST/ || $lineno == 2 && $line =~ /FASTA/ |
|
711
|
0 |
0 |
78 |
$line =~ /^[{}]$/ || $line =~ /^(?:name|longname|sequence-ID|
creation-date|direction|strandedness|
type|offset|group-ID|creator|descrip|
comment|sequence)/x |
|
729
|
0 |
0 |
76 |
$lineno == 1 && $line =~ /GENETIC SEQUENCE DATA BANK/ || $lineno == 1 && $line =~ /^LOCUS / || $lineno == 2 && $line =~ /^DEFINITION / || $lineno == 3 && $line =~ /^ACCESSION / |
|
744
|
0 |
0 |
78 |
$lineno == 1 && $line =~ /^GENSCAN.*Date.*Time/ || $line =~ /^(?:Sequence\s+\w+|Parameter matrix|Predicted genes)/ |
|
757
|
0 |
0 |
78 |
$lineno == 1 && $line =~ /^##gff-version/ || $lineno == 2 && $line =~ /^##date/ |
|
770
|
0 |
0 |
78 |
$lineno == 2 && $line =~ /^HMMER/ || $lineno == 3 && $line =~ /Washington University School of Medicine/ |
|
797
|
2 |
0 |
76 |
$lineno == 1 && $line =~ /^;;/ || $lineno > 1 && $line =~ /^;[^;]?/ |
|
823
|
0 |
1 |
77 |
$line =~ m[^//] || $line =~ /MSF:.*Type:.*Check:|Name:.*Len:/ |
|
852
|
1 |
1 |
76 |
$lineno != 1 && $line =~ /^[\sA-IK-NP-Z.,()]+\*?$/i || $line =~ /^>(?:P1|F1|DL|DC|RL|RC|N3|N1);/ |
|
879
|
0 |
0 |
77 |
$lineno == 1 && $line =~ /^\s*\d+\s\d+/ || $lineno == 2 && $line =~ /^\w\s+[A-IK-NP-Z\s]+/ || $lineno == 3 && $line =~ /(?:^\w\s+[A-IK-NP-Z\s]+|\s+[A-IK-NP-Z\s]+)/ |
|
918
|
0 |
0 |
78 |
$lineno == 1 && $line =~ /^!!RICH_SEQUENCE/ || $line =~ /^[{}]$/ || $line =~ /^(?:name|type|longname|
checksum|creation-date|strand|sequence)/x |
|
937
|
0 |
1 |
77 |
$lineno == 1 && $line =~ /^#=ID / || $lineno == 2 && $line =~ /^#=AC / || $line =~ /^#=SQ / |
|
951
|
2 |
0 |
76 |
$lineno == 1 && $line =~ /^# STOCKHOLM/ || $line =~ /^#=(?:GF|GS) / |
|
993
|
1 |
0 |
77 |
$lineno == 1 && $line =~ /##fileformat=VCFv/ || $lineno == 2 && $line =~ /##fileDate=/ |