Branch Coverage

Bio/Seq/Quality.pm
Criterion Covered Total %
branch 43 62 69.3


line true false branch
218 1 861 if $meta
219 800 62 if $qual
220 1 861 if $trace
221 2 860 if $trace_indices
253 1 713 if ref $value and ref $value ne 'ARRAY' and $value->isa('Bio::Seq::PrimaryQual')
256 833 673 if $value
491 0 0 unless (defined $self->{'trace_data'})
492 0 0 unless (grep {lc $trace eq $_;} 'a', 'g', 'c', 't')
496 0 0 exists $self->{'trace_data'}{$trace} && ref $self->{'trace_data'}{$trace} eq 'ARRAY' ? :
498 0 0 if (defined $scale and $scale != 0)
521 310 916 if (defined $value)
522 0 310 unless $value =~ /^[-+]?\d+$/
525 204 106 if defined $self->{'_threshold'} and $self->{'_threshold'} ne $value
549 0 4 if defined $threshold
552 4 0 unless defined $self->{'_ranges'}
561 36 28 if $maskQual->[$i] < $self->{'_threshold'}
588 0 301 if defined $threshold
591 301 0 unless defined $self->{'_ranges'}
615 0 300 if defined $threshold
618 0 300 unless defined $self->{'_ranges'}
645 2 301 if defined $threshold
648 2 301 unless defined $self->{'_ranges'}
651 0 303 unless defined $self->{'_ranges'}
685 0 2 unless $minl =~ /^\+?\d+$/
689 0 2 unless defined $self->{'_ranges'}
694 1 5 if $r->{'length'} < $minl
715 0 307 unless defined $self->threshold
724 208513 91677 if ($rangeFlag) { }
726 58609 149904 if ($qual->[$i] < $threshold)
740 59065 32612 if ($qual->[$i] >= $threshold)
748 238 69 if ($rangeFlag)