| line |
true |
false |
branch |
|
188
|
1 |
0 |
if $model |
|
189
|
1 |
0 |
if $database |
|
190
|
1 |
0 |
if $accession |
|
193
|
0 |
1 |
if defined $mincutoff and defined $maxcutoff |
|
195
|
0 |
1 |
if defined $mincutoff |
|
196
|
0 |
1 |
if defined $maxcutoff |
|
234
|
0 |
199 |
if $line =~ /^\s+$/ |
|
235
|
3 |
196 |
if (index($line, '#RM') == 0) { } |
|
|
98 |
98 |
elsif ($line =~ s/^>//) { } |
|
|
98 |
0 |
elsif ($line =~ /^(\S+)\s+(.+?)\s+(\d+)\s+(\d+)\s+(\d+)\s(.*)$/mx) { } |
|
236
|
1 |
2 |
if (index($line, '#RM scored') == 0) { } |
|
|
1 |
1 |
elsif (index($line, '#RM descr') == 0) { } |
|
|
1 |
0 |
elsif (index($line, '#RM dfile') == 0) { } |
|
237
|
0 |
1 |
if ($seentop) |
|
274
|
27 |
71 |
if ($self->within_element('hit') and $hitid ne $lastid) { } |
|
|
1 |
70 |
elsif (not $self->within_element('hit')) { } |
|
275
|
0 |
27 |
if $lastscore |
|
286
|
98 |
0 |
$acc ? : |
|
|
0 |
98 |
$ver ? : |
|
300
|
0 |
98 |
unless ($hitid eq $hspid) |
|
304
|
1 |
97 |
unless (defined $sprintf) |
|
305
|
0 |
1 |
if ($score =~ /[^0-9.-]+/gmsx) { } |
|
306
|
0 |
0 |
if (defined $hsp_min or defined $hsp_max) |
|
316
|
98 |
0 |
unless ($sprintf) |
|
317
|
0 |
98 |
if ($hsp_min and $score <= $hsp_min or $hsp_max and $score >= $hsp_max) { } |
|
325
|
0 |
98 |
if (defined $hsp_min and $score > $hsp_min) { } |
|
|
0 |
196 |
elsif (defined $hsp_max and $score < $hsp_max) { } |
|
326
|
0 |
0 |
if not $lastscore or $score > $lastscore |
|
328
|
0 |
0 |
if not $lastscore or $score < $lastscore |
|
334
|
98 |
0 |
if ($oktobuild) |
|
337
|
98 |
0 |
if ($strand == 0) { } |
|
347
|
0 |
98 |
$sprintf ? : |
|
|
0 |
98 |
$sprintf ? : |
|
360
|
98 |
0 |
unless $sprintf |
|
364
|
1 |
0 |
if ($self->within_element('hit')) |
|
365
|
0 |
1 |
if $lastscore |
|
371
|
1 |
0 |
if ($seentop) |
|
394
|
127 |
0 |
if ($type) |
|
395
|
127 |
0 |
if ($self->_eventHandler->will_handle($type)) |
|
401
|
1 |
126 |
if (defined $type and $type eq 'result') |
|
426
|
127 |
2 |
if ($type) { } |
|
|
2 |
0 |
elsif ($MAPPING{$nm}) { } |
|
427
|
127 |
0 |
if ($self->_eventHandler->will_handle($type)) |
|
435
|
0 |
2 |
if (ref($MAPPING{$nm}) =~ /hash/i) { } |
|
449
|
1 |
128 |
if defined $type and $type eq 'result' |
|
487
|
0 |
197 |
unless $data and ref $data |
|
489
|
0 |
1376 |
if $data->{$nm} and $data->{$nm} =~ /^\s*$/o |
|
490
|
1376 |
0 |
if ($MAPPING{$nm}) |
|
491
|
0 |
1376 |
if (ref($MAPPING{$nm}) =~ /hash/i) { } |
|
516
|
0 |
2 |
unless defined $data->{'Data'} and not $data->{'Data'} =~ /^\s+$/o |
|
537
|
0 |
170 |
if not defined $name && defined $self->{'_elements'} or scalar @{$self->{'_elements'};} == 0 |
|
539
|
168 |
2 |
if $_ eq $name |
|
558
|
0 |
0 |
unless defined $self->{'_elements'}[0] |
|
624
|
1 |
1 |
if @_ |
|
655
|
1 |
1 |
if @_ |
|
672
|
1 |
1 |
if @_ |
|
688
|
1 |
1 |
if @_ |
|
705
|
0 |
1 |
if $score and not $score =~ /[0-9.]+/ |
|
707
|
0 |
1 |
if @_ |
|
724
|
0 |
1 |
if $score and not $score =~ /[0-9.]+/ |
|
726
|
0 |
1 |
if @_ |
|
746
|
1 |
98 |
if ($delim) |
|
747
|
1 |
0 |
if (ref($delim) =~ /HASH/) { } |
|
750
|
4 |
0 |
if (exists $data{$d}) |
|
784
|
0 |
98 |
if ($#desc_el != $#seq_el) |
|
794
|
0 |
0 |
index($motif, 'ctx') == 0 ? : |
|
|
686 |
0 |
index($motif, 'ss') == 0 ? : |
|
|
392 |
686 |
index($motif, 'h3') == 0 ? : |
|
|
392 |
1078 |
index($motif, 'h5') == 0 ? : |