Condition Coverage

Bio/PrimarySeqI.pm
Criterion Covered Total %
condition 48 65 73.8


and 3 conditions

line !l l&&!r l&&r condition
404 11336 1 0 $alphabet ne 'dna' and $alphabet ne 'rna'
447 0 318 2 defined $start and ref $start
318 0 2 defined $start and ref $start and $start->isa('Bio::LocationI')
585 262 1 24 $args[0] and $args[0] =~ /^-[A-Z]+/i
606 283 0 4 defined $terminator and $terminator ne ''
607 286 0 1 defined $unknown and $unknown ne ''
608 267 0 20 defined $frame and $frame ne ''
609 267 0 20 defined $codonTableId and $codonTableId ne ''
926 32 2 10 $first_only and $frame == $start_frame_order[0]

or 2 conditions

line l !l condition
610 9 275 $complete || 0
672 1 1 $id ||= ''
731 0 1 $self->desc || ''
777 1 0 $self->desc || ''

or 3 conditions

line l !l&&r !l&&!r condition
375 0 0 11271 $self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq')
465 7 0 313 $self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq')
7 1 312 $self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq') or $self->isa('Bio::Seq::RichSeq')
610 3 9 275 $complete_codons ||= $complete || 0
649 262 6 7 $frame == 0 or $frame == 1
268 7 0 $frame == 0 or $frame == 1 or $frame == 2
692 1 2 281 $self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq')
737 0 0 1 $self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq')
783 0 0 1 $self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq')
921 34 10 486 $codon_table->is_ter_codon($this_codon) or my $is_last_codon_in_frame = $j >= $seqlen - 5