| line |
true |
false |
branch |
|
84
|
2 |
0 |
if (not defined $self->sequence_factory) |
|
110
|
5 |
12 |
if ($seen == 1 and $entry =~ /^\s*>/) |
|
114
|
0 |
12 |
if ($entry eq '>') { } |
|
|
6 |
6 |
elsif ($entry =~ /\s*>(.+?)$/) { } |
|
118
|
0 |
6 |
unless ($id, $fulldesc) = $1 =~ /^\s*(\S+)\s*(.*)$/ |
|
127
|
0 |
12 |
if ++$count % 1000 == 0 and $self->verbose > 0 |
|
129
|
1 |
1 |
unless ($seen) |
|
156
|
0 |
6 |
if ($largeseq->length < $alnlen) |
|
162
|
1 |
0 |
if $aln->num_sequences |
|
183
|
0 |
1 |
unless ($aln and $aln->isa('Bio::Align::AlignI')) |
|
191
|
0 |
6 |
unless $self->_print(">$name $desc\n") |
|
196
|
0 |
12 |
unless $self->_print("$seqsub\n") |
|
201
|
1 |
0 |
if $self->_flush_on_write and defined $self->_fh |