| line |
true |
false |
branch |
|
101
|
0 |
8 |
if (not defined $aln && $aln->isa('Bio::Align::AlignI')) { } |
|
|
0 |
8 |
elsif ($aln->num_sequences != 2) { } |
|
126
|
0 |
2 |
if (not defined $aln && $aln->isa('Bio::Align::AlignI')) { } |
|
|
0 |
2 |
elsif ($aln->num_sequences != 2) { } |
|
141
|
27 |
356 |
if $firstseq->[$i] =~ /^$Bio::Align::PairwiseStatistics::GapChars$/ |
|
143
|
13 |
343 |
if $seq->[$i] =~ /^$Bio::Align::PairwiseStatistics::GapChars$/ |
|
144
|
40 |
303 |
if ($firstseq->[$i] ne $seq->[$i]) |
|
165
|
0 |
10 |
if (not defined $aln && $aln->isa('Bio::Align::AlignI')) { } |
|
|
0 |
10 |
elsif ($aln->num_sequences != 2) { } |
|
207
|
0 |
4 |
if (not defined $aln && $aln->isa('Bio::Align::AlignI')) { } |
|
|
0 |
4 |
elsif ($aln->num_sequences != 2) { } |
|
216
|
0 |
4 |
unless ($seq1->alphabet eq 'dna' || $seq1->alphabet eq 'rna' and $seq2->alphabet eq 'dna' || $seq2->alphabet eq 'rna') |
|
230
|
686 |
80 |
if (not $res1 eq '-' || $res2 eq '-') { } |
|
231
|
606 |
80 |
if ($res1 eq $res2) { } |
|
238
|
80 |
0 |
if (not $res1 eq '-' && $res2 eq '-') { } |
|
240
|
26 |
54 |
if $res2 eq '-' |
|
241
|
32 |
48 |
unless $prevres eq '-' |
|
243
|
0 |
0 |
unless $prevres1 eq '-' and $prevres2 eq '-' |
|
245
|
32 |
48 |
if ($open) { } |