| line |
true |
false |
branch |
|
417
|
0 |
5 |
unless ($seqobj->isa('Bio::PrimarySeqI')) |
|
420
|
0 |
5 |
unless (defined $seqobj->alphabet and defined $Bio::Tools::SeqStats::Alphabets{$seqobj->alphabet}) |
|
462
|
13 |
5 |
if (defined $object_argument) |
|
467
|
5 |
13 |
if ($_is_instance) { } |
|
468
|
1 |
4 |
if ($self->{'_monomer_count'}) |
|
478
|
0 |
13 |
unless $seqobj->isa('Bio::PrimarySeqI') |
|
485
|
14 |
3 |
$_is_strict ? : |
|
491
|
2 |
15 |
if $seqobj->alphabet eq 'rna' |
|
498
|
1 |
240 |
if $element eq '*' |
|
502
|
4 |
13 |
if ($_is_instance) |
|
539
|
10 |
2 |
if (defined $object_argument) |
|
543
|
2 |
10 |
if ($_is_instance) { } |
|
544
|
0 |
2 |
if ($weight_array = $self->{'_mol_wt'}) |
|
552
|
0 |
10 |
unless $seqobj->isa('Bio::PrimarySeqI') |
|
584
|
7 |
5 |
if ($moltype =~ /protein/) { } |
|
600
|
2 |
10 |
if ($_is_instance) |
|
634
|
1 |
2 |
if (defined $object_argument) |
|
638
|
2 |
1 |
if ($_is_instance) { } |
|
639
|
0 |
2 |
if ($rcount = $self->{'_codon_count'}) |
|
646
|
0 |
1 |
unless $seqobj->isa('Bio::PrimarySeqI') |
|
654
|
0 |
3 |
unless ($alphabet =~ /[dr]na/i) |
|
662
|
0 |
3 |
unless ($_is_strict) |
|
663
|
0 |
0 |
if $self->verbose >= 0 |
|
676
|
0 |
1112 |
if ($codon =~ /[^ACTGU]/i) |
|
680
|
122 |
990 |
unless (defined $rcount->{$codon}) |
|
687
|
2 |
1 |
if ($_is_instance) |
|
720
|
4 |
0 |
if (defined $object_argument) |
|
724
|
0 |
4 |
if ($_is_instance) { } |
|
725
|
0 |
0 |
if (my $gravy = $self->{'_hydropathicity'}) |
|
732
|
0 |
4 |
unless $seqobj->isa('Bio::PrimarySeqI') |
|
738
|
1 |
3 |
unless ($seqobj->length > 0) |
|
745
|
1 |
2 |
unless ($alphabet =~ /protein/i) |
|
753
|
1 |
1 |
unless ($_is_strict) |
|
770
|
0 |
1 |
if ($_is_instance) |
|
804
|
4 |
29 |
if $seqobj->alphabet eq 'rna' |
|
816
|
25 |
8 |
unless ($seqstring =~ /[^$alphabet]/) |
|
824
|
8 |
0 |
unless ($seqstring =~ /[^$alphabet]/) |