| line |
true |
false |
branch |
|
286
|
0 |
1 |
if (not defined $seq and @args and ref $args[0]) |
|
291
|
33 |
1 |
if (defined $seq) |
|
292
|
0 |
33 |
unless ($seq->isa('Bio::PrimarySeqI')) |
|
295
|
0 |
33 |
if (length $seq->seq == 0) |
|
327
|
0 |
9 |
unless (exists $self->{'_string'}) |
|
332
|
32 |
13 |
unless $self->{'_string'}[$i] or @{$self->{'_alpha'}[$i];} > 1 |
|
333
|
5 |
8 |
if ($self->{'_string'}[$i] == $#{$$self{'_alpha'}[$i];}) { } |
|
334
|
1 |
4 |
if ($i == $#{$$self{'_string'};}) { } |
|
373
|
35 |
0 |
if ($alphabet eq 'dna' or $alphabet eq 'rna') { } |
|
|
0 |
0 |
elsif ($alphabet eq 'protein') { } |
|
400
|
34 |
0 |
if ($alphabet eq 'dna' or $alphabet eq 'rna') { } |
|
|
0 |
0 |
elsif ($alphabet eq 'protein') { } |
|
499
|
1 |
0 |
unless (exists $self->{'_string'}) |
|
534
|
0 |
285 |
unless (defined $iupacs) |
|
539
|
276 |
9 |
if ($match_rna) |
|
540
|
178 |
98 |
unless $part =~ s/T/TU/i |
|
542
|
103 |
182 |
if (length $part > 1) |
|
555
|
0 |
0 |
unless $method eq 'DESTROY' |