| line |
!l |
l&&!r |
l&&r |
condition |
|
440
|
2 |
0 |
89 |
$gi and index($gi, 'GI:') == 0 |
|
769
|
6 |
0 |
105 |
$builder->want_slot('features') and defined $buffer |
|
|
6 |
1 |
104 |
$builder->want_slot('features') and defined $buffer and $buffer =~ /^FEATURES/o |
|
827
|
36 |
8141 |
103 |
$species and $feat->primary_tag eq 'source' |
|
|
8177 |
2 |
101 |
$species and $feat->primary_tag eq 'source' and $feat->has_tag('db_xref') |
|
|
8143 |
101 |
0 |
$species and $feat->primary_tag eq 'source' and $feat->has_tag('db_xref') and !$species->ncbi_taxid || $species->ncbi_taxid && $species->ncbi_taxid =~ /^list/ |
|
888
|
0 |
0 |
10 |
defined $buffer and substr($buffer, 0, 2) ne '//' |
|
891
|
1 |
7 |
93 |
defined $buffer and $buffer =~ s/^ORIGIN\s+// |
|
892
|
0 |
92 |
1 |
$annotation and length $buffer > 0 |
|
946
|
0 |
25 |
0 |
ref $seq and $seq->isa('Bio::SeqI') |
|
955
|
2 |
23 |
0 |
$seq->can('division') and defined($div = $seq->division) |
|
960
|
2 |
23 |
0 |
$seq->can('molecule') and defined($mol = $seq->molecule) |
|
1010
|
2 |
23 |
0 |
$seq->isa('Bio::Seq::RichSeqI') and $seq->pid |
|
1015
|
2 |
5 |
18 |
$seq->isa('Bio::Seq::RichSeqI') and defined $seq->seq_version |
|
1023
|
0 |
0 |
18 |
defined $id && $id =~ /^\d+$/ |
|
1246
|
0 |
0 |
24 |
$self->_flush_on_write and defined $self->_fh |
|
1265
|
0 |
430 |
0 |
ref $fth and $fth->isa('Bio::SeqIO::FTHelper') |
|
1278
|
857 |
140 |
0 |
$tag eq 'db_xref' and grep /HASH/, @{$fth->field->{$tag};} |
|
1559
|
0 |
202 |
101 |
$tag and not exists $source{$tag} |
|
1565
|
106 |
6 |
102 |
$tag ne 'CLASSIFICATION' and $tag eq 'ORGANISM' |
|
|
112 |
1 |
101 |
$tag ne 'CLASSIFICATION' and $tag eq 'ORGANISM' and $line =~ /(?
|
|
1620
|
0 |
96 |
5 |
$species and $species =~ /(.+)\s+((?:subsp\.|var\.).+)/ |
|
1629
|
0 |
0 |
101 |
defined $species || defined $genus and $unkn == 0 |
| line |
l |
!l&&r |
!l&&!r |
condition |
|
328
|
4 |
0 |
109 |
$params{'-molecule'} eq 'dna' or $params{'-molecule'} eq 'rna' |
|
592
|
38 |
11 |
0 |
$dbsrc =~ /(\S+)\.(\d+)/ or $dbsrc =~ /(\S+)/ |
|
813
|
0 |
0 |
0 |
$buffer =~ /^\s{5,5}\S+/o or $buffer =~ /^\S+/o |
|
827
|
95 |
0 |
6 |
!$species->ncbi_taxid || $species->ncbi_taxid && $species->ncbi_taxid =~ /^list/ |
|
1291
|
975 |
1 |
109 |
not $FTQUAL_NO_QUOTE{$tag} or length "/$tag=$value" >= $FTQUAL_LINE_LENGTH |
|
1343
|
100 |
437 |
0 |
defined $line or defined($line = $self->_readline) |
|
1553
|
101 |
416 |
0 |
defined $line or defined($line = $self->_readline) |
|
1629
|
101 |
0 |
0 |
defined $species || defined $genus |
|
1675
|
59852 |
8269 |
12191 |
@qual or index($2, '/') == 0 |
|
1729
|
12312 |
0 |
52083 |
not $value =~ /\"$/ or $value =~ tr/"// % 2 |