Condition Coverage

Bio/SeqIO/Handler/GenericRichSeqHandler.pm
Criterion Covered Total %
condition 36 61 59.0


and 3 conditions

line !l l&&!r l&&r condition
460 0 0 0 ref $factory and $factory->isa('Bio::Factory::LocationFactoryI')
485 0 0 0 ref $coll and $coll->isa('Bio::AnnotationCollectionI')
544 1 0 30 $date and $date =~ s/\s*((\d{1,2})-(\w{3})-(\d{2,4})).*/$1/
636 0 0 10 defined $name and length $name
721 4 0 24 $gi and index($gi, 'GI:') == 0
817 26 0 30 $seqformat eq 'genbank' and $data->{'ORGANISM'} =~ /(.+?)\s(\S+;[^\n\.]+)/ox
832 1 0 16 $data->{'CROSSREF'} and $data->{'CROSSREF'} =~ /NCBI_TaxID=(\d+)/
1091 777 41 0 $primary_tag eq 'source' and exists $data->{'db_xref'}
1092 0 1 35 $self->{'_params'}{'-species'} and $data->{'db_xref'} =~ /taxon:(\d+)/mosx
1113 818 0 0 $seqid and not $loc->is_remote

or 2 conditions

line l !l condition
687 15 0 $rest ||= ''
839 30 26 $data->{'ORGANISM'} || ''
853 2 54 $organelle ||= ''
854 16 40 $common ||= ''
971 0 1 $db || 'GenBank'

or 3 conditions

line l !l&&r !l&&!r condition
311 1646 0 0 $data->{'NAME'} || $self->throw('No name tag defined!')
527 29 2 0 $self->{'_params'}{'-alphabet'} eq 'dna' or @tokens > 2
657 3 10 4 $seq_div eq 'Reviewed' || $seq_div eq 'STANDARD'
2 2 0 $seq_div eq 'Unreviewed' || $seq_div eq 'PRELIMINARY'
762 8 9 34 $version =~ /\(Rel\. (\d+), Last sequence update\)/ or $version =~ /sequence version (\d+)\./
8 9 17 $version =~ /\(Rel\. (\d+), Last annotation update\)/ or $version =~ /entry version (\d+)\./
904 0 0 0 $dbsrc =~ /(\S+)\.(\d+)/ or $dbsrc =~ /(\S+)/