Condition Coverage

Bio/PopGen/Statistics.pm
Criterion Covered Total %
condition 51 100 51.0


and 3 conditions

line !l l&&!r l&&r condition
230 0 0 3 ref $ingroup and $ingroup->isa('Bio::PopGen::PopulationI')
327 0 0 1 ref $individuals and $individuals->isa('Bio::PopGen::PopulationI')
416 0 0 3 ref $ingroup and $ingroup->isa('Bio::PopGen::PopulationI')
511 0 0 1 ref $individuals and $individuals->isa('Bio::PopGen::PopulationI')
608 0 0 4 ref $individuals and $individuals->isa('Bio::PopGen::PopulationI')
695 0 0 12 ref $individuals and $individuals->isa('Bio::PopGen::PopulationI')
789 1 0 4 ref $n and $n->isa('Bio::PopGen::PopulationI')
836 0 0 2 ref $individuals and $individuals->isa('Bio::PopGen::PopulationI')
902 0 0 16 $type and $individuals->isa('Bio::PopGen::PopulationI')
991 0 0 6 ref $ingroup and $ingroup->isa('Bio::PopGen::PopulationI')
992 0 4 0 ref $ingroup->[0] and $ingroup->[0]->isa('Bio::PopGen::IndividualI')
1024 0 5 0 ref $outgroup->[0] and $outgroup->[0]->isa('Bio::PopGen::IndividualI')
1106 0 0 2 ref $pop && $pop->isa('Bio::PopGen::PopulationI')
1107 0 0 0 ref $pop->[0] and $pop->[0]->isa('Bio::PopGen::IndividualI')
1415 9 1617 810 $total and $total < 2
1429 161 27 90 $polarized and $outcodon ne $outcodon2
1493 2 1 3 $tNdiff == $Ndiff and $tSdiff <= $Sdiff
1529 0 0 3 $tNdiff == $Ndiff and $tSdiff <= $Sdiff

or 2 conditions

line l !l condition
1252 4 0 $pairwise_genotypes{$N1genostr} || 0
1254 3 1 $pairwise_genotypes{$N2genostr} || 0
1256 3 1 $pairwise_genotypes{$N4genostr} || 0
1258 3 1 $pairwise_genotypes{$N5genostr} || 0
1262 4 0 $genotypes{$site1}{$homozA_site1} || 0
1263 4 0 $genotypes{$site2}{$homozB_site2} || 0
1264 4 0 $allele_freqs{$site1}{$allele1_site1} || 0
1267 4 0 $allele_freqs{$site2}{$allele1_site2} || 0

or 3 conditions

line l !l&&r !l&&!r condition
953 0 0 0 $freq1 > 1 or $freq2 > 1
1070 0 10 40 @outalleles > 1 or @in_alleles == 1
1154 0 0 5 length $alleles[0] != 1 or length $alleles[1] != 1
1403 5155 0 8971 $AA eq 'X' or $AA eq '*'
5155 0 8971 $AA eq 'X' or $AA eq '*' or $allele =~ /N/i
1429 90 0 188 $polarized and $outcodon ne $outcodon2 or $out_AA eq 'X'
90 0 188 $polarized and $outcodon ne $outcodon2 or $out_AA eq 'X' or $out_AA eq '*'
1490 0 0 14 $c =~ /$gapchar/ or $outcodon =~ /$gapchar/
1493 8 0 6 $path->[0] < $Ndiff or $tNdiff == $Ndiff and $tSdiff <= $Sdiff
1529 89 0 3 $path->[0] < $Ndiff or $tNdiff == $Ndiff and $tSdiff <= $Sdiff