| line |
true |
false |
branch |
|
170
|
0 |
9 |
unless (defined $gene and defined $species) |
|
175
|
1 |
8 |
if $seq |
|
177
|
9 |
0 |
unless (defined $uid) |
|
229
|
0 |
20 |
if ($uid and defined $Bio::Map::GeneMap::GENEMAPS->{'by_uid'}{$uid}) { } |
|
|
20 |
0 |
elsif ($gene and $species) { } |
|
233
|
2 |
18 |
ref $gene ? : |
|
234
|
11 |
9 |
if (defined $Bio::Map::GeneMap::GENEMAPS->{'by_ns'}{$name}{$species}) |
|
238
|
11 |
9 |
if ($gene_map) |
|
239
|
0 |
11 |
if $desc |
|
240
|
0 |
11 |
if defined $up |
|
241
|
0 |
11 |
if defined $down |
|
242
|
0 |
11 |
if $seq |
|
261
|
9 |
67 |
if (defined $id) |
|
282
|
9 |
21 |
if ($value) |
|
286
|
0 |
0 |
if ($old_species) |
|
331
|
9 |
478 |
if (@args > 0) |
|
336
|
0 |
9 |
unless $gene |
|
338
|
2 |
7 |
ref $gene ? : |
|
339
|
0 |
9 |
if (defined $self->{'gene'}) { } |
|
340
|
0 |
0 |
if ($self->{'gene'} ne $gene_obj) |
|
348
|
0 |
0 |
if defined $up |
|
349
|
0 |
0 |
if defined $down |
|
354
|
0 |
9 |
unless $up >= 0 |
|
382
|
9 |
10 |
unless $self->gene |
|
383
|
0 |
10 |
if ($value) |
|
409
|
0 |
13 |
if (defined $value) |
|
410
|
0 |
0 |
unless $value >= 0 |
|
432
|
9 |
11 |
if (@_) |
|
453
|
0 |
11 |
$actual_length > $expected_length ? : |
|
477
|
7 |
0 |
if (not $seq or CORE::length $seq < $expected_length) |
|
486
|
0 |
7 |
if (@slice_stuff) { } |
|
491
|
0 |
0 |
$strand == -1 ? : |
|
492
|
0 |
0 |
$strand == -1 ? : |
|
495
|
0 |
0 |
if $converted_start > $converted_end |
|
500
|
0 |
0 |
if ($new_slice and my $seq_str = $new_slice->seq) |
|
501
|
0 |
0 |
if ($strand == -1) |
|
509
|
10 |
8 |
unless $pos->can('seq') |
|
514
|
3 |
0 |
if ($result[$i] eq 'N') |
|
551
|
1 |
3 |
if ($start and ref $start and $start->isa('Bio::RangeI')) |
|
553
|
1 |
0 |
if ($start->isa('Bio::Map::Position')) { } |
|
565
|
4 |
0 |
$self->{'seq'} ? : |
|
575
|
0 |
0 |
unless $seq |