Subroutine Coverage

Bio/DB/GFF.pm
Criterion Covered Total %
subroutine 73 119 61.3
pod 67 79 84.8


line count pod subroutine
597 3 n/a BEGIN
599 3 n/a BEGIN
600 3 n/a BEGIN
601 3 n/a BEGIN
602 3 n/a BEGIN
603 3 n/a BEGIN
604 3 n/a BEGIN
606 3 n/a BEGIN
716 5 Yes new
806 25 Yes types
836 0 Yes classes
965 203 Yes segment
976 203 n/a _multiple_return_args
996 0 No abs_segment
1001 224 No setup_segment_args
1069 15 Yes features
1129 0 Yes get_seq_stream
1172 16 Yes get_feature_by_name
1196 74 n/a __ANON__
1227 0 Yes get_feature_by_target
1246 5 Yes get_feature_by_attribute
1259 10 n/a __ANON__
1288 5 Yes get_feature_by_id
1292 5 n/a __ANON__
1316 0 Yes get_feature_by_gid
1320 0 n/a __ANON__
1347 0 Yes delete_fattribute_to_features
1375 20 Yes delete_features
1404 5 Yes delete_groups
1478 21 Yes delete
1533 195 Yes absolute
1560 170 Yes strict_bounds_checking
1580 0 Yes get_Seq_by_id
1599 0 Yes get_Seq_by_accession
1617 0 Yes get_Seq_by_acc
1635 0 Yes get_Stream_by_name
1655 0 Yes get_Stream_by_id
1684 0 Yes get_Stream_by_group
1707 0 Yes all_seqfeatures
1744 5 Yes initialize
1832 5 Yes load_gff
1865 0 Yes load_gff_file
1928 5 Yes load_fasta
1960 0 Yes load_fasta_file
1980 0 Yes load_sequence_string
1989 10 No setup_argv
1992 3 n/a BEGIN
2038 0 Yes lock_on_load
2061 0 Yes meta
2085 5 Yes default_meta_values
2106 8 Yes error
2127 216 Yes debug
2150 111 Yes automerge
2194 20 Yes attributes
2231 0 Yes fast_queries
2259 20 Yes add_aggregator
2303 106 Yes aggregators
2327 5 Yes clear_aggregators
2341 15 Yes preferred_groups
2353 144 n/a _preferred_groups_hash
2396 193 Yes abscoords
2423 0 Yes default_aggregators
2450 5 Yes do_load_gff
2489 214 n/a _load_gff_line
2571 5 n/a _load_sequence_start
2578 10 n/a _load_sequence_finish
2584 32950 n/a _load_sequence_line
2618 5 Yes load_sequence
2636 30330 No insert_sequence_chunk
2651 30330 No dna_chunk_size
2655 0 No insert_sequence
2662 335 No default_class
2672 165 Yes refclass
2692 0 Yes setup_load
2710 0 Yes finish_load
2744 0 Yes load_gff_line
2763 0 Yes do_initialize
2800 120 Yes dna
2811 0 No fetch_sequence
2814 85 No features_in_range
2868 0 Yes get_dna
2965 0 Yes get_features
2987 0 n/a _feature_by_name
2993 0 n/a _feature_by_attribute
3016 0 n/a _feature_by_id
3069 85 Yes overlapping_features
3094 0 Yes contained_features
3113 0 Yes contained_in
3140 0 Yes get_abscoords
3174 0 Yes get_types
3233 844 Yes make_feature
3281 15 No make_aggregated_feature
3325 168 Yes make_match_sub
3328 0 n/a __ANON__
3379 595 Yes make_object
3404 0 Yes do_attributes
3421 2 Yes clone
3467 100 n/a _features
3488 15 n/a __ANON__
3489 270 n/a __ANON__
3501 470 n/a __ANON__
3539 0 Yes get_features_iterator
3562 165 Yes split_group
3589 99 n/a _split_gff2_group
3676 71 Yes gff3_name_munging
3689 66 n/a _split_gff3_group
3742 66 n/a _gff3_name_munging
3777 0 n/a _delete_features
3783 5 n/a _delete_groups
3789 0 n/a _delete
3795 0 n/a _delete_fattribute_to_features
3802 184 No unescape
3809 2 No print_gff3_warning
3827 3 n/a BEGIN
3829 3 n/a BEGIN
3832 0 n/a new
3838 0 n/a next_seq
3853 0 n/a new
3858 0 n/a next_seq