Subroutine Coverage
| Bio/DB/Flat/BinarySearch.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
34 |
57 |
59.6
|
| pod |
34 |
42 |
80.9
|
| line |
count |
pod |
subroutine |
|
209
|
1 |
n/a |
BEGIN |
|
211
|
1 |
n/a |
BEGIN |
|
214
|
0 |
No |
systell |
|
215
|
0 |
No |
syseof |
|
217
|
1 |
n/a |
BEGIN |
|
218
|
1 |
n/a |
BEGIN |
|
219
|
1 |
n/a |
BEGIN |
|
220
|
1 |
n/a |
BEGIN |
|
222
|
1 |
n/a |
BEGIN |
|
224
|
1 |
n/a |
BEGIN |
|
225
|
1 |
n/a |
BEGIN |
|
226
|
1 |
n/a |
BEGIN |
|
271
|
1 |
Yes |
new |
|
322
|
0 |
No |
new_from_registry |
|
345
|
0 |
Yes |
get_Seq_by_id |
|
384
|
0 |
Yes |
get_entry_by_id |
|
407
|
0 |
Yes |
get_stream_by_id |
|
460
|
0 |
Yes |
get_Seq_by_acc |
|
485
|
0 |
Yes |
get_Seq_by_version |
|
510
|
0 |
Yes |
get_Seq_by_secondary |
|
611
|
0 |
Yes |
read_header |
|
636
|
0 |
Yes |
read_record |
|
660
|
0 |
Yes |
get_all_primary_ids |
|
689
|
0 |
Yes |
find_entry |
|
746
|
1 |
Yes |
build_index |
|
816
|
1 |
n/a |
_index_file |
|
951
|
1 |
Yes |
write_primary_index |
|
1005
|
1 |
Yes |
write_secondary_indices |
|
1072
|
0 |
Yes |
new_secondary_filehandle |
|
1095
|
0 |
Yes |
open_secondary_index |
|
1130
|
7 |
n/a |
_add_id_position |
|
1186
|
2 |
Yes |
make_config_file |
|
1260
|
1 |
Yes |
read_config_file |
|
1378
|
1 |
Yes |
get_fileid_by_filename |
|
1401
|
0 |
Yes |
get_filehandle_by_fileid |
|
1424
|
1 |
Yes |
primary_index_file |
|
1443
|
0 |
Yes |
primary_index_filehandle |
|
1466
|
70 |
Yes |
format |
|
1475
|
2 |
No |
alphabet |
|
1495
|
3 |
Yes |
write_flag |
|
1515
|
6 |
Yes |
dbname |
|
1534
|
7 |
Yes |
index_directory |
|
1547
|
4 |
n/a |
_config_path |
|
1554
|
3 |
n/a |
_config_file |
|
1572
|
0 |
Yes |
record_size |
|
1589
|
4 |
Yes |
primary_namespace |
|
1607
|
0 |
Yes |
index_type |
|
1625
|
0 |
Yes |
index_version |
|
1643
|
2 |
Yes |
primary_pattern |
|
1661
|
2 |
Yes |
start_pattern |
|
1679
|
61 |
Yes |
secondary_patterns |
|
1706
|
1 |
Yes |
secondary_namespaces |
|
1718
|
0 |
No |
new_SWISSPROT_index |
|
1740
|
0 |
No |
new_EMBL_index |
|
1765
|
0 |
No |
new_FASTA_index |
|
1793
|
64 |
No |
guess_alphabet |
|
1817
|
1 |
n/a |
_guess_patterns |