| line |
!l |
l&&!r |
l&&r |
condition |
|
154
|
0 |
22 |
0 |
defined $entry and $entry =~ /^\s+$/ |
|
157
|
0 |
0 |
22 |
$entry and $entry =~ /^#NEXUS/i |
|
204
|
0 |
22 |
0 |
$gap and $gap =~ m"[\(\)\[\]\{\}/\\\,\;\:\=\*\'\`\<\>\^]" |
|
206
|
1 |
21 |
0 |
$missing and $missing =~ m"[\(\)\[\]\{\}/\\\,\;\:\=\*\'\`\<\>\^]" |
|
234
|
372 |
9 |
78 |
$interleave and defined $count |
|
|
381 |
0 |
78 |
$interleave and defined $count and $count <= $seqcount |
|
330
|
19 |
3 |
453 |
defined $entry and not $entry =~ /endblock/i |
|
376
|
0 |
2 |
0 |
$aln and $aln->isa('Bio::Align::AlignI') |
|
391
|
0 |
0 |
2 |
$self->flag('symbols') and $aln->symbol_chars |
|
425
|
10 |
48 |
268 |
$tempcount + 10 < $length and $index < 5 |
|
448
|
0 |
0 |
2 |
$self->_flush_on_write and defined $self->_fh |