| line |
true |
false |
branch |
|
63
|
3 |
0 |
unless ($class =~ /Bio::Polloc::RuleSet::(\S+)/)
|
|
67
|
3 |
0 |
if $file and not $format
|
|
68
|
3 |
0 |
if ($format)
|
|
70
|
3 |
0 |
if $format
|
|
74
|
3 |
0 |
if ($class =~ /Bio::Polloc::RuleSet::(\S+)/) { }
|
|
75
|
3 |
0 |
if ('Bio::Polloc::RuleIO'->_load_module($class))
|
|
113
|
0 |
13 |
if (defined $value and "$value")
|
|
118
|
3 |
10 |
unless defined $$self{'_prefix_id'}
|
|
128
|
0 |
7 |
if defined $value
|
|
140
|
3 |
7 |
if $value
|
|
166
|
0 |
6 |
unless $#rules >= 0
|
|
169
|
0 |
6 |
unless $rule->isa('Bio::Polloc::RuleI')
|
|
194
|
0 |
22 |
unless defined $index
|
|
195
|
0 |
22 |
if $index < 0
|
|
196
|
1 |
21 |
if $index > $#{$self->get_rules;}
|
|
221
|
1 |
3 |
unless $rule
|
|
241
|
0 |
8 |
if defined $value
|
|
269
|
0 |
3 |
unless $value->isa('Bio::Polloc::GroupCriteria')
|
|
270
|
3 |
0 |
unless defined $$self{'_grouprules'}
|
|
325
|
0 |
0 |
unless defined $self->genomes
|
|
333
|
0 |
0 |
if ($rule->executable)
|
|
340
|
0 |
0 |
if defined $advance
|
|
383
|
0 |
18 |
unless $param
|
|
385
|
9 |
9 |
if (defined $value)
|
|
440
|
1 |
6 |
if defined $value
|
|
441
|
3 |
4 |
unless defined $$self{'_genomes'}
|
|
442
|
0 |
4 |
unless ref $$self{'_genomes'} and ref($$self{'_genomes'}) =~ /ARRAY/i
|
|
468
|
0 |
0 |
if defined $nid
|
|
479
|
0 |
6 |
unless defined $self->prefix_id
|
|
499
|
7 |
6 |
unless $format
|
|
501
|
3 |
3 |
if $format =~ /^(conf|config|bme)$/
|
|
502
|
6 |
0 |
if $format =~ /^(cfg)$/
|