| line |
true |
false |
branch |
|
56
|
0 |
0 |
unless $seq
|
|
59
|
0 |
0 |
if ($seq->isa('Bio::SeqIO'))
|
|
64
|
0 |
0 |
wantarray ? :
|
|
67
|
0 |
0 |
unless $seq->isa('Bio::Seq')
|
|
73
|
0 |
0 |
if defined $tv
|
|
84
|
0 |
0 |
defined $self->ruleset ? :
|
|
|
0 |
0 |
unless my $mreps = $self->_executable(defined $self->ruleset ? $self->ruleset->value('path') : undef)
|
|
104
|
0 |
0 |
if ($line =~ /^ -----------------------------/) { }
|
|
|
0 |
0 |
elsif ($ontable) { }
|
|
109
|
0 |
0 |
unless $line =~ /^\s+(\d+)\s+->\s+(\d+)\s+:\s+(\d+)\s+<(\d+)>\s+\[([\d\.]+)\]\s+([\d\.]+)\s+([\w\s]+)$/
|
|
112
|
0 |
0 |
if $score > $maxsim or $score < $minsim
|
|
115
|
0 |
0 |
defined $id ? :
|
|
128
|
0 |
0 |
wantarray ? :
|
|
141
|
0 |
0 |
defined $self->value->{$k} ? :
|
|
222
|
0 |
0 |
unless $seq
|
|
226
|
0 |
0 |
unless $emma
|
|
227
|
0 |
0 |
unless $cons
|
|
232
|
0 |
0 |
unless -s $outseq
|
|
237
|
0 |
0 |
unless (-s $outaln)
|
|
238
|
0 |
0 |
if -e $outaln
|
|
245
|
0 |
0 |
if $ln =~ /^>/
|
|
275
|
0 |
1 |
$^O =~ /mswin/i ? :
|
|
|
0 |
1 |
$^O =~ /(macos|darwin)/i ? :
|
|
279
|
0 |
1 |
if $path
|
|
283
|
0 |
3 |
if $exe
|