| line |
true |
false |
branch |
|
79
|
0 |
0 |
unless $seq
|
|
82
|
0 |
0 |
if ($seq->isa('Bio::SeqIO'))
|
|
87
|
0 |
0 |
wantarray ? :
|
|
90
|
0 |
0 |
unless $seq->isa('Bio::Seq')
|
|
98
|
0 |
0 |
if (defined $self->ruleset) { }
|
|
105
|
0 |
0 |
unless $cf_script
|
|
122
|
0 |
0 |
unless chdir $out_dir
|
|
129
|
0 |
0 |
if ($line =~ /^GFF results are be in (.*)/) { }
|
|
|
0 |
0 |
elsif ($line =~ /^failure: (.*)/) { }
|
|
133
|
0 |
0 |
unless (-e $gff_output)
|
|
145
|
0 |
0 |
if $line =~ /^#/
|
|
146
|
0 |
0 |
if $line =~ /^\s*$/
|
|
148
|
0 |
0 |
if $f[2] eq 'PossibleCRISPR' and $self->_search_value('IGNOREPROBABLE')
|
|
150
|
0 |
0 |
if ($f[2] =~ /^(?:Possible)?CRISPR$/) { }
|
|
|
0 |
0 |
elsif (defined $$loci{$par{'Parent'}} and $f[2] eq 'CRISPRspacer') { }
|
|
152
|
0 |
0 |
defined $id ? :
|
|
|
0 |
0 |
$f[2] eq 'CRISPR' ? :
|
|
171
|
0 |
0 |
unless chdir $cwd
|
|
206
|
0 |
0 |
defined $self->value->{$k} ? :
|
|
259
|
0 |
1 |
if $path
|
|
266
|
0 |
24 |
if $exe
|
|
285
|
0 |
0 |
unless (defined $value)
|
|
289
|
0 |
0 |
if (ref($value) =~ /hash/i)
|
|
293
|
0 |
0 |
ref($value) =~ /array/i ? :
|
|
296
|
0 |
0 |
unless defined $args[0]
|
|
297
|
0 |
0 |
unless ($args[0] =~ /^-/)
|
|
301
|
0 |
0 |
unless ($#args % 2)
|
|
309
|
0 |
0 |
unless defined $p
|
|
310
|
0 |
0 |
unless ($p =~ /^([\d\.eE+-]+|t(rue)?|f(alse)?)$/i)
|
|
314
|
0 |
0 |
$p =~ /^f(alse)$/i ? :
|