| line |
true |
false |
branch |
|
52
|
0 |
0 |
if defined $self->val
|
|
53
|
0 |
0 |
unless ref $self->operators and ref($self->operators) =~ /ARRAY/
|
|
57
|
0 |
0 |
unless defined $o1
|
|
59
|
0 |
0 |
unless defined $o2
|
|
60
|
0 |
0 |
if $self->operation =~ /^\s*(?:\+)\s*$/i
|
|
61
|
0 |
0 |
if $self->operation =~ /^\s*(?:\-)\s*$/i
|
|
62
|
0 |
0 |
if $self->operation =~ /^\s*(?:\*)\s*$/i
|
|
63
|
0 |
0 |
if $self->operation =~ m[^\s*(?:/)\s*$]i
|
|
64
|
0 |
0 |
if $self->operation =~ /^\s*(?:%)\s*$/i
|
|
65
|
0 |
0 |
if $self->operation =~ /^\s*(?:\*\*|\^)\s*$/i
|
|
66
|
0 |
0 |
if ($self->operation =~ /^\s*aln-(sim|score)(?: with)?\s*$/i)
|
|
68
|
0 |
0 |
unless $self->_load_module('Bio::Tools::Run::Alignment::Muscle')
|
|
71
|
0 |
0 |
unless UNIVERSAL::can($o1, 'isa')
|
|
72
|
0 |
0 |
unless UNIVERSAL::can($o2, 'isa')
|
|
73
|
0 |
0 |
unless $o1->isa('Bio::Seq')
|
|
74
|
0 |
0 |
unless $o2->isa('Bio::Seq')
|
|
79
|
0 |
0 |
$ret eq 'sim' ? :
|
|
81
|
0 |
0 |
unless defined $out
|