| line |
true |
false |
branch |
|
35
|
0 |
0 |
unless -e $fasta_path
|
|
37
|
0 |
0 |
unless -d $basedir
|
|
39
|
0 |
0 |
unless defined $baseURL
|
|
42
|
0 |
0 |
if (defined $log)
|
|
43
|
0 |
0 |
unless open LOG, '>>', $log
|
|
46
|
0 |
0 |
unless ($baseURL =~ m[/$])
|
|
52
|
0 |
0 |
unless -d $template_path
|
|
54
|
0 |
0 |
unless my $faToTwoBit = can_run('faToTwoBit')
|
|
57
|
0 |
0 |
unless my $bedToBigBed = can_run('bedToBigBed')
|
|
73
|
0 |
0 |
if (defined $log)
|
|
83
|
0 |
0 |
if (defined $log)
|
|
87
|
0 |
0 |
unless ($success)
|
|
112
|
0 |
0 |
unless $template->process($hubtxt_file, $hubtxt_vars, "$hubtxt_path")
|
|
131
|
0 |
0 |
unless $template->process($genometxt_file, $genometxt_vars, $genometxt_path)
|
|
157
|
0 |
0 |
unless $template->process($description_html_file, $description_html_vars, $description_html_path)
|
|
169
|
0 |
0 |
unless $template->process($group_txt_file, $group_txt_vars, $group_txt_path)
|
|
175
|
0 |
0 |
unless ($filesdir =~ /-/)
|
|
190
|
0 |
0 |
unless ($big_wig_ids =~ /^-$/)
|
|
201
|
0 |
0 |
unless $template->process($trackDb_txt_file, $trackDb_txt_vars, $trackDb_txt_path)
|
|
204
|
0 |
0 |
if (defined $log)
|
|
216
|
0 |
0 |
unless $species
|
|
218
|
0 |
0 |
unless -d $basedir
|
|
220
|
0 |
0 |
unless defined $baseURL
|
|
223
|
0 |
0 |
if (defined $log)
|
|
224
|
0 |
0 |
unless open LOG, '>>', $log
|
|
227
|
0 |
0 |
unless ($baseURL =~ m[/$])
|
|
233
|
0 |
0 |
unless -d $template_path
|
|
235
|
0 |
0 |
unless my $faToTwoBit = can_run('faToTwoBit')
|
|
238
|
0 |
0 |
unless my $bedToBigBed = can_run('bedToBigBed')
|
|
248
|
0 |
0 |
if (defined $log)
|
|
271
|
0 |
0 |
unless $template->process($hubtxt_file, $hubtxt_vars, "$hubtxt_path")
|
|
290
|
0 |
0 |
unless $template->process($genometxt_file, $genometxt_vars, $genometxt_path)
|
|
295
|
0 |
0 |
unless ($filesdir =~ /-/)
|
|
296
|
0 |
0 |
if (-e $chrom_sizes_file) { }
|
|
314
|
0 |
0 |
unless ($big_wig_ids =~ /^-$/)
|
|
325
|
0 |
0 |
unless $template->process($trackDb_txt_file, $trackDb_txt_vars, $trackDb_txt_path)
|
|
328
|
0 |
0 |
if (defined $log)
|
|
337
|
0 |
0 |
unless chdir $filesdir
|
|
347
|
0 |
0 |
unless chdir $currentDirectory
|
|
354
|
0 |
0 |
unless chdir $directoryPath
|
|
384
|
0 |
0 |
unless chdir $currentDirectory
|
|
392
|
0 |
0 |
unless chdir $directoryPath
|
|
396
|
0 |
0 |
if ($bigwig_entry =~ /,/) { }
|
|
401
|
0 |
0 |
if ($big_wig_pair[0] =~ /\.pos\./) { }
|
|
|
0 |
0 |
elsif ($big_wig_pair[1] =~ /\.pos\./) { }
|
|
409
|
0 |
0 |
if ($big_wig_pair[0] =~ /\.neg\./) { }
|
|
|
0 |
0 |
elsif ($big_wig_pair[1] =~ /\.neg\./) { }
|
|
469
|
0 |
0 |
unless chdir $currentDirectory
|
|
478
|
0 |
0 |
if ($digitnumber > 1) { }
|
|
542
|
0 |
0 |
if ($acc =~ /^(N[CST]\_\d{6})\.\d+?$/) { }
|
|
|
0 |
0 |
elsif ($acc =~ /^(N[CST]\_\d{6})$/) { }
|
|
561
|
0 |
0 |
if ($fastaheader =~ /^>gi/) { }
|
|
572
|
0 |
0 |
if (valid_ncbi_accession($fastaheader)) { }
|
|
617
|
0 |
0 |
if ($header_skipped) { }
|