| line |
true |
false |
branch |
|
51
|
0 |
0 |
unless $self->has_features
|
|
59
|
0 |
0 |
unless (exists $fs{$gbkey})
|
|
70
|
0 |
0 |
unless $self->has_features
|
|
84
|
0 |
0 |
if ($header = $gffio->next_segment) { }
|
|
93
|
0 |
0 |
if $f->primary_tag eq 'exon'
|
|
100
|
0 |
0 |
if ($f->has_tag('ID')) { }
|
|
110
|
0 |
0 |
if ($f->has_tag('Parent'))
|
|
116
|
0 |
0 |
if ($f->has_tag('Name')) { }
|
|
|
0 |
0 |
elsif ($f->has_tag('ID')) { }
|
|
129
|
0 |
0 |
if (not exists ${$self->features;}{$uid}) { }
|
|
154
|
0 |
0 |
unless $self->has_features
|
|
156
|
0 |
0 |
unless $self->has_featstat
|
|
158
|
0 |
0 |
unless -d $dest
|
|
160
|
0 |
0 |
unless open LOG, '>>', $log
|
|
|
0 |
0 |
if (defined $log)
|
|
162
|
0 |
0 |
if (defined $gbkey) { }
|
|
164
|
0 |
0 |
unless exists ${$self->featstat;}{$gbkey}
|
|
169
|
0 |
0 |
if $gbk eq 'total' or $gbk eq 'Src' or $gbk eq 'accession' or $gbk eq 'origin' or $gbk eq 'count'
|
|
178
|
0 |
0 |
unless open BEDOUT, "> $bedname_u"
|
|
182
|
0 |
0 |
unless ${$self->features;}{$uid}{'gbkey'} eq $f
|
|
190
|
0 |
0 |
${$self->features;}{$uid}{'strand'} == -1 ? :
|
|
208
|
0 |
0 |
if (defined $log)
|
|
216
|
0 |
0 |
unless -d $dest
|
|
218
|
0 |
0 |
unless $self->has_accession
|
|
222
|
0 |
0 |
unless open $fh, '>', $fn
|
|
227
|
0 |
0 |
if $ft =~ /total/ or $ft =~ /accession/ or $ft =~ /origin/
|