| line |
true |
false |
branch |
|
36
|
0 |
0 |
unless -e $fasta_path
|
|
38
|
0 |
0 |
unless -d $basedir
|
|
40
|
0 |
0 |
unless defined $baseURL
|
|
43
|
0 |
0 |
if (defined $log)
|
|
44
|
0 |
0 |
unless open LOG, '>>', $log
|
|
47
|
0 |
0 |
unless ($baseURL =~ m[/$])
|
|
53
|
0 |
0 |
unless -d $template_path
|
|
55
|
0 |
0 |
unless my $faToTwoBit = can_run('faToTwoBit')
|
|
58
|
0 |
0 |
unless my $bedToBigBed = can_run('bedToBigBed')
|
|
73
|
0 |
0 |
if (defined $log)
|
|
83
|
0 |
0 |
if (defined $log)
|
|
87
|
0 |
0 |
unless ($success)
|
|
112
|
0 |
0 |
unless $template->process($hubtxt_file, $hubtxt_vars, "$hubtxt_path")
|
|
131
|
0 |
0 |
unless $template->process($genometxt_file, $genometxt_vars, $genometxt_path)
|
|
157
|
0 |
0 |
unless $template->process($description_html_file, $description_html_vars, $description_html_path)
|
|
169
|
0 |
0 |
unless $template->process($group_txt_file, $group_txt_vars, $group_txt_path)
|
|
192
|
0 |
0 |
unless $template->process($trackDb_txt_file, $trackDb_txt_vars, $trackDb_txt_path)
|
|
195
|
0 |
0 |
if (defined $log)
|
|
207
|
0 |
0 |
unless $species
|
|
209
|
0 |
0 |
unless -d $basedir
|
|
211
|
0 |
0 |
unless defined $baseURL
|
|
214
|
0 |
0 |
if (defined $log)
|
|
215
|
0 |
0 |
unless open LOG, '>>', $log
|
|
218
|
0 |
0 |
unless ($baseURL =~ m[/$])
|
|
224
|
0 |
0 |
unless -d $template_path
|
|
226
|
0 |
0 |
unless my $faToTwoBit = can_run('faToTwoBit')
|
|
229
|
0 |
0 |
unless my $bedToBigBed = can_run('bedToBigBed')
|
|
239
|
0 |
0 |
if (defined $log)
|
|
262
|
0 |
0 |
unless $template->process($hubtxt_file, $hubtxt_vars, "$hubtxt_path")
|
|
281
|
0 |
0 |
unless $template->process($genometxt_file, $genometxt_vars, $genometxt_path)
|
|
284
|
0 |
0 |
if (-e $chrom_sizes_file) { }
|
|
307
|
0 |
0 |
unless $template->process($trackDb_txt_file, $trackDb_txt_vars, $trackDb_txt_path)
|
|
310
|
0 |
0 |
if (defined $log)
|
|
319
|
0 |
0 |
unless chdir $filesdir
|
|
329
|
0 |
0 |
unless chdir $currentDirectory
|
|
336
|
0 |
0 |
unless chdir $directoryPath
|
|
367
|
0 |
0 |
unless chdir $currentDirectory
|
|
375
|
0 |
0 |
if ($digitnumber > 1) { }
|
|
421
|
0 |
0 |
if ($acc =~ /^(N[CST]\_\d{6})\.\d+?$/) { }
|
|
|
0 |
0 |
elsif ($acc =~ /^(N[CST]\_\d{6})$/) { }
|
|
440
|
0 |
0 |
if ($fastaheader =~ /^>gi|/) { }
|
|
452
|
0 |
0 |
if (valid_ncbi_accession($fastaid)) { }
|
|
497
|
0 |
0 |
if ($header_skipped) { }
|