Branch Coverage

blib/lib/Bio/ViennaNGS/UCSC.pm
Criterion Covered Total %
branch 0 82 0.0


line true false branch
36 0 0 unless -e $fasta_path
38 0 0 unless -d $basedir
40 0 0 unless defined $baseURL
43 0 0 if (defined $log)
44 0 0 unless open LOG, '>>', $log
47 0 0 unless ($baseURL =~ m[/$])
53 0 0 unless -d $template_path
55 0 0 unless my $faToTwoBit = can_run('faToTwoBit')
58 0 0 unless my $bedToBigBed = can_run('bedToBigBed')
73 0 0 if (defined $log)
83 0 0 if (defined $log)
87 0 0 unless ($success)
112 0 0 unless $template->process($hubtxt_file, $hubtxt_vars, "$hubtxt_path")
131 0 0 unless $template->process($genometxt_file, $genometxt_vars, $genometxt_path)
157 0 0 unless $template->process($description_html_file, $description_html_vars, $description_html_path)
169 0 0 unless $template->process($group_txt_file, $group_txt_vars, $group_txt_path)
192 0 0 unless $template->process($trackDb_txt_file, $trackDb_txt_vars, $trackDb_txt_path)
195 0 0 if (defined $log)
207 0 0 unless $species
209 0 0 unless -d $basedir
211 0 0 unless defined $baseURL
214 0 0 if (defined $log)
215 0 0 unless open LOG, '>>', $log
218 0 0 unless ($baseURL =~ m[/$])
224 0 0 unless -d $template_path
226 0 0 unless my $faToTwoBit = can_run('faToTwoBit')
229 0 0 unless my $bedToBigBed = can_run('bedToBigBed')
239 0 0 if (defined $log)
262 0 0 unless $template->process($hubtxt_file, $hubtxt_vars, "$hubtxt_path")
281 0 0 unless $template->process($genometxt_file, $genometxt_vars, $genometxt_path)
284 0 0 if (-e $chrom_sizes_file) { }
307 0 0 unless $template->process($trackDb_txt_file, $trackDb_txt_vars, $trackDb_txt_path)
310 0 0 if (defined $log)
319 0 0 unless chdir $filesdir
329 0 0 unless chdir $currentDirectory
336 0 0 unless chdir $directoryPath
367 0 0 unless chdir $currentDirectory
375 0 0 if ($digitnumber > 1) { }
421 0 0 if ($acc =~ /^(N[CST]\_\d{6})\.\d+?$/) { }
0 0 elsif ($acc =~ /^(N[CST]\_\d{6})$/) { }
480 0 0 if ($header_skipped) { }