Subroutine Coverage
| blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
23 |
25 |
92.0
|
| pod |
13 |
13 |
100.0
|
| line |
count |
pod |
subroutine |
|
3
|
1 |
n/a |
BEGIN |
|
4
|
1 |
n/a |
BEGIN |
|
5
|
1 |
n/a |
BEGIN |
|
7
|
1 |
n/a |
BEGIN |
|
8
|
1 |
n/a |
BEGIN |
|
9
|
1 |
n/a |
BEGIN |
|
10
|
1 |
n/a |
BEGIN |
|
11
|
1 |
n/a |
BEGIN |
|
12
|
1 |
n/a |
BEGIN |
|
13
|
1 |
n/a |
BEGIN |
|
26
|
1 |
n/a |
BEGIN |
|
138
|
6 |
Yes |
program_name |
|
143
|
3 |
Yes |
program_dir |
|
149
|
1 |
Yes |
new |
|
176
|
1 |
Yes |
prepare |
|
252
|
1 |
Yes |
run |
|
291
|
0 |
Yes |
error_string |
|
301
|
2 |
Yes |
alignment |
|
318
|
1 |
Yes |
tree |
|
337
|
1 |
Yes |
get_parameters |
|
345
|
8 |
Yes |
set_parameter |
|
366
|
1 |
Yes |
set_default_parameters |
|
384
|
0 |
Yes |
no_param_checks |
|
395
|
2 |
Yes |
outfile_name |
|
409
|
1 |
n/a |
DESTROY |