| line |
count |
pod |
subroutine |
|
3
|
2 |
n/a |
BEGIN |
|
4
|
2 |
n/a |
BEGIN |
|
5
|
2 |
n/a |
BEGIN |
|
7
|
2 |
n/a |
BEGIN |
|
17
|
9 |
Yes |
new |
|
116
|
14 |
Yes |
model_num |
|
123
|
12 |
Yes |
model_description |
|
130
|
7 |
Yes |
time_used |
|
137
|
15 |
Yes |
kappa |
|
144
|
17 |
Yes |
num_site_classes |
|
151
|
12 |
Yes |
dnds_site_classes |
|
158
|
1 |
Yes |
get_pos_selected_sites |
|
163
|
8 |
Yes |
add_pos_selected_site |
|
170
|
1 |
Yes |
get_NEB_pos_selected_sites |
|
175
|
8 |
Yes |
add_NEB_pos_selected_site |
|
184
|
0 |
Yes |
get_BEB_pos_selected_sites |
|
189
|
9 |
Yes |
add_BEB_pos_selected_site |
|
196
|
5 |
Yes |
next_tree |
|
202
|
2 |
Yes |
get_trees |
|
208
|
0 |
Yes |
rewind_tree_iterator |
|
213
|
9 |
Yes |
add_tree |
|
222
|
4 |
Yes |
shape_params |
|
229
|
15 |
Yes |
likelihood |