| line |
count |
pod |
subroutine |
|
504
|
1 |
n/a |
BEGIN |
|
505
|
1 |
n/a |
BEGIN |
|
607
|
102 |
Yes |
get_exons |
|
682
|
1 |
Yes |
get_alt_exons |
|
699
|
1 |
Yes |
get_common_exons |
|
704
|
1 |
Yes |
get_uncommon_exons |
|
709
|
3 |
Yes |
get_alt_common_exons |
|
716
|
42 |
Yes |
get_introns |
|
780
|
1 |
Yes |
get_alt_introns |
|
797
|
1 |
Yes |
get_common_introns |
|
802
|
1 |
Yes |
get_uncommon_introns |
|
807
|
3 |
Yes |
get_alt_common_introns |
|
812
|
6 |
n/a |
_get_alt_common_things |
|
882
|
9 |
Yes |
get_transcripts |
|
930
|
1 |
Yes |
collapse_transcripts |
|
1016
|
4 |
Yes |
get_transcript_length |
|
1039
|
3 |
Yes |
is_coding |
|
1077
|
13 |
Yes |
get_cds |
|
1093
|
4 |
Yes |
get_cdsStart |
|
1114
|
4 |
Yes |
get_cdsEnd |
|
1133
|
4 |
Yes |
get_transcript_cds_length |
|
1144
|
0 |
Yes |
get_start_codon |
|
1185
|
2 |
Yes |
get_stop_codon |
|
1228
|
13 |
Yes |
get_utrs |
|
1340
|
2 |
No |
get_transcript_utr_length |
|
1351
|
4 |
Yes |
get_5p_utrs |
|
1363
|
4 |
Yes |
get_3p_utrs |
|
1375
|
2 |
No |
get_transcript_5p_utr_length |
|
1385
|
2 |
No |
get_transcript_3p_utr_length |
|
1400
|
0 |
Yes |
gff_string |
|
1404
|
0 |
Yes |
gtf_string |
|
1484
|
0 |
Yes |
ucsc_string |
|
1526
|
0 |
Yes |
bed_string |
|
1577
|
0 |
Yes |
filter_transcript_support_level |
|
1654
|
0 |
Yes |
filter_transcript_gencode_basic |
|
1685
|
1 |
Yes |
filter_transcript_biotype |
|
1724
|
0 |
n/a |
_process_ucsc_transcript |
|
1785
|
1 |
n/a |
_return_filtered_transcripts |