| line |
true |
false |
branch |
|
90
|
990 |
135 |
if ($i - $offset >= 0)
|
|
94
|
990 |
135 |
if ($i + $offset < @genes)
|
|
119
|
75 |
64 |
if ($self->_first_gene_of_group_which_doesnt_have_paralogs->{$group[0]}) { }
|
|
|
1 |
63 |
elsif (@group == 1) { }
|
|
|
6 |
57 |
elsif ($self->_contains_paralogs(\@group)) { }
|
|
141
|
4 |
6 |
unless ($any_paralogs)
|
|
198
|
6 |
57 |
if defined $self->_find_paralogs($group)
|
|
216
|
15 |
133 |
if ($v_len < $smallest_number and $v_len > 1)
|
|
221
|
12 |
57 |
if defined $smallest_group
|
|
243
|
38 |
74 |
unless defined $gene_paralog_group
|
|
258
|
12 |
19 |
if grep {$_ eq $g;} @paralogs
|
|
265
|
1 |
5 |
if @$last > 0
|
|
268
|
6 |
0 |
if ($self->_do_sorting)
|
|
289
|
21 |
17 |
if ($score > $best_score)
|
|
303
|
110 |
246 |
unless defined $input_group
|
|
304
|
115 |
131 |
if $cgn2->{$input_group}
|
|
306
|
0 |
38 |
if (scalar @{$cgn1;} == 0)
|