| lib/Bio/Roary/ExtractProteomeFromGFF.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| branch | 4 | 16 | 25.0 |
| line | true | false | branch |
|---|---|---|---|
| 80 | 2 | 540 | if ($line =~ /^>/) |
| 85 | 504 | 38 | if ($at_sequence == 1) |
| 119 | 0 | 0 | unless -e $infile |
| 125 | 0 | 0 | if $line =~ /^>/ |
| 127 | 0 | 0 | if ($line =~ /^(>[^:]+)/) |
| 167 | 0 | 0 | if ($number_of_Xs_found > $maximum_number_of_Xs) { } |
| 184 | 0 | 0 | if ($self->_does_sequence_contain_too_many_unknowns($seq)) |
| 192 | 0 | 0 | if ($sequence_found == 0) |