| line |
true |
false |
branch |
|
42
|
6 |
0 |
if ($group =~ /$prefix([\d]+)$/)
|
|
44
|
4 |
2 |
if ($group_id > $highest_group)
|
|
71
|
0 |
25 |
unless open my $fh, '>', $self->output_filename
|
|
118
|
48 |
0 |
if ($line =~ /ID=["']?([^;"']+)["']?;?/i) { }
|
|
125
|
48 |
0 |
if $line =~ /inference=([^;]+);/
|
|
126
|
48 |
0 |
if $line =~ /product=([^;]+)[;\n]/
|
|
139
|
78 |
31 |
unless defined $self->_ids_to_product->{$id_name}
|
|
145
|
18 |
45 |
if (@sorted_product_keys > 0) { }
|
|
157
|
0 |
29 |
unless open my $fh, $self->groups_filename
|
|
162
|
98 |
0 |
if ($line =~ /^(.+): (.+)$/)
|
|
183
|
57 |
186 |
if (defined $self->_ids_to_gene_names->{$id_name} and $self->_ids_to_gene_names->{$id_name} ne '')
|
|
195
|
28 |
114 |
if (@sorted_gene_names > 0) { }
|
|
213
|
78 |
31 |
unless defined $current_gene_size
|
|
214
|
0 |
31 |
if $current_gene_size < 1
|
|
218
|
45 |
18 |
if @gene_lengths == 0
|
|
237
|
91 |
0 |
if $group_name =~ /$group_prefix/
|
|
244
|
0 |
91 |
unless $group_name =~ /$group_prefix/
|
|
247
|
0 |
91 |
if (defined $gene_name_freq{$consensus_gene_name}) { }
|
|
281
|
0 |
0 |
if (@{$self->_groups_to_id_names->{$group};} == 0)
|
|
310
|
2 |
10 |
unless defined $self->_ids_to_verbose_stats->{$id_name}{'product'}
|
|
316
|
6 |
1 |
if (@sorted_product_keys > 0) { }
|
|
330
|
2 |
10 |
unless defined $self->_ids_to_verbose_stats->{$g}{'inference'}
|