| line |
count |
pod |
subroutine |
|
6
|
2 |
n/a |
BEGIN |
|
7
|
2 |
n/a |
BEGIN |
|
8
|
2 |
n/a |
BEGIN |
|
9
|
2 |
n/a |
BEGIN |
|
10
|
2 |
n/a |
BEGIN |
|
28
|
6 |
n/a |
_nuc_fasta_filename |
|
36
|
3 |
n/a |
_extract_nuc_fasta_cmd |
|
45
|
1 |
n/a |
_extract_nuc_files_from_all_gffs |
|
64
|
0 |
n/a |
_kraken_cmd |
|
75
|
0 |
n/a |
_kraken_report_cmd |
|
85
|
0 |
n/a |
_kraken_output_filename |
|
93
|
0 |
n/a |
_run_kraken_on_nuc_files |
|
121
|
0 |
n/a |
_kraken_report_output_filename |
|
127
|
0 |
n/a |
_run_kraken_report_on_kraken_files |
|
153
|
0 |
n/a |
_build__kraken_data |
|
163
|
0 |
n/a |
_parse_kraken_reports |
|
180
|
0 |
n/a |
_parse_kraken_report |
|
212
|
1 |
n/a |
_build__header |
|
216
|
1 |
n/a |
_build__tmp_directory_obj |
|
220
|
1 |
n/a |
_build__tmp_directory |
|
225
|
1 |
No |
report |
|
237
|
2 |
n/a |
BEGIN |