Subroutine Coverage
| Bio/Prospect/Thread.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
12 |
61 |
19.6
|
| pod |
40 |
43 |
93.0
|
| line |
count |
pod |
subroutine |
|
37
|
2 |
n/a |
BEGIN |
|
38
|
2 |
n/a |
BEGIN |
|
39
|
2 |
n/a |
BEGIN |
|
40
|
2 |
n/a |
BEGIN |
|
41
|
2 |
n/a |
BEGIN |
|
42
|
2 |
n/a |
BEGIN |
|
43
|
2 |
n/a |
BEGIN |
|
44
|
2 |
n/a |
BEGIN |
|
47
|
2 |
n/a |
BEGIN |
|
70
|
1 |
Yes |
new |
|
102
|
1 |
Yes |
qname |
|
122
|
0 |
Yes |
qseq |
|
142
|
0 |
Yes |
qseq_align |
|
162
|
0 |
Yes |
qss |
|
182
|
0 |
Yes |
qlen |
|
202
|
0 |
Yes |
qstart |
|
234
|
0 |
Yes |
qend |
|
266
|
0 |
Yes |
target_start |
|
286
|
0 |
Yes |
target_end |
|
306
|
0 |
Yes |
tname |
|
326
|
0 |
Yes |
pdbcode |
|
346
|
0 |
Yes |
tseq |
|
366
|
0 |
Yes |
tseq_align |
|
386
|
0 |
Yes |
tss |
|
406
|
0 |
Yes |
tlen |
|
431
|
0 |
Yes |
tstart |
|
456
|
0 |
Yes |
tend |
|
476
|
0 |
Yes |
template_start |
|
496
|
0 |
No |
template_end |
|
516
|
0 |
No |
is_global |
|
536
|
0 |
Yes |
raw_align |
|
556
|
0 |
Yes |
align_len |
|
576
|
0 |
Yes |
identities |
|
596
|
0 |
Yes |
svm_score |
|
621
|
0 |
Yes |
raw_score |
|
641
|
0 |
Yes |
gap_score |
|
661
|
0 |
Yes |
mutation_score |
|
681
|
0 |
Yes |
ssfit_score |
|
701
|
0 |
Yes |
pair_score |
|
721
|
0 |
Yes |
singleton_score |
|
741
|
0 |
Yes |
rgyr |
|
761
|
0 |
Yes |
alignment |
|
835
|
0 |
Yes |
write_xml |
|
858
|
0 |
Yes |
output_rasmol_script |
|
1006
|
0 |
Yes |
thread_structure |
|
1110
|
0 |
Yes |
get_mismatches |
|
1130
|
0 |
Yes |
get_similarities |
|
1150
|
0 |
Yes |
get_deletions |
|
1170
|
0 |
Yes |
get_inserts |
|
1189
|
0 |
No |
get_inserted_residues |
|
1211
|
0 |
Yes |
get_identities |
|
1231
|
0 |
Yes |
pdb_model |
|
1255
|
0 |
n/a |
_add_similarity |
|
1278
|
0 |
n/a |
_add_mismatch |
|
1301
|
0 |
n/a |
_add_deletion |
|
1325
|
0 |
n/a |
_add_insert |
|
1351
|
0 |
n/a |
_add_identity |
|
1375
|
0 |
n/a |
_a_to_aaa_code |
|
1402
|
0 |
n/a |
_format_select |
|
1431
|
1 |
n/a |
_parse_xml_file |
|
1464
|
0 |
n/a |
_parse_structure |