Subroutine Coverage
| blib/lib/Bio/Phylo/Matrices/DatumRole.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
23 |
62 |
37.1
|
| pod |
21 |
48 |
43.7
|
| line |
count |
pod |
subroutine |
|
2
|
16 |
n/a |
BEGIN |
|
3
|
16 |
n/a |
BEGIN |
|
4
|
16 |
n/a |
BEGIN |
|
5
|
16 |
n/a |
BEGIN |
|
6
|
16 |
n/a |
BEGIN |
|
7
|
16 |
n/a |
BEGIN |
|
8
|
16 |
n/a |
BEGIN |
|
9
|
16 |
n/a |
BEGIN |
|
83
|
724 |
Yes |
new |
|
88
|
0 |
No |
accession_number |
|
88
|
0 |
No |
alphabet |
|
88
|
0 |
No |
annotation |
|
88
|
0 |
No |
can_call_new |
|
88
|
0 |
No |
desc |
|
88
|
0 |
No |
display_id |
|
88
|
0 |
No |
end |
|
88
|
0 |
No |
feature_count |
|
88
|
0 |
No |
get_SeqFeatures |
|
88
|
0 |
No |
get_all_SeqFeatures |
|
88
|
0 |
No |
get_nse |
|
88
|
0 |
No |
id |
|
88
|
0 |
No |
is_circular |
|
88
|
0 |
No |
length |
|
88
|
0 |
No |
meta_names |
|
88
|
0 |
No |
moltype |
|
88
|
0 |
No |
primary_id |
|
88
|
0 |
No |
primary_seq |
|
88
|
0 |
No |
revcom |
|
88
|
0 |
No |
seq |
|
88
|
0 |
No |
species |
|
88
|
0 |
No |
start |
|
88
|
0 |
No |
strand |
|
88
|
0 |
No |
subseq |
|
88
|
0 |
No |
translate |
|
88
|
0 |
No |
trunc |
|
88
|
0 |
No |
write_GFF |
|
99
|
16 |
n/a |
BEGIN |
|
117
|
0 |
Yes |
new_from_bioperl |
|
194
|
713 |
Yes |
set_char |
|
248
|
133 |
Yes |
get_matrix |
|
269
|
1462 |
Yes |
get_char |
|
298
|
0 |
Yes |
get_unaligned_char |
|
325
|
623 |
Yes |
get_length |
|
348
|
50 |
Yes |
get_by_index |
|
374
|
0 |
Yes |
get_index_of |
|
410
|
719 |
Yes |
can_contain |
|
474
|
23 |
Yes |
calc_state_counts |
|
527
|
0 |
Yes |
calc_distance |
|
564
|
5 |
Yes |
calc_state_frequencies |
|
604
|
0 |
Yes |
reverse |
|
624
|
0 |
Yes |
concat |
|
658
|
0 |
Yes |
consense |
|
715
|
752 |
n/a |
_validate |
|
738
|
0 |
Yes |
to_xml |
|
815
|
0 |
Yes |
to_dom |
|
904
|
0 |
Yes |
copy_atts |
|
912
|
0 |
Yes |
complement |
|
921
|
0 |
Yes |
slice |
|
928
|
1488 |
n/a |
_type |
|
929
|
358 |
n/a |
_container |
|
930
|
18 |
n/a |
_tag |
|
933
|
133 |
n/a |
_update_characters |