Subroutine Coverage

blib/lib/Bio/Phylo/Forest/TreeRole.pm
Criterion Covered Total %
subroutine 78 145 53.7
pod 77 92 83.7


line count pod subroutine
2 31 n/a BEGIN
3 31 n/a BEGIN
4 31 n/a BEGIN
5 31 n/a BEGIN
6 31 n/a BEGIN
7 31 n/a BEGIN
8 31 n/a BEGIN
9 31 n/a BEGIN
10 31 n/a BEGIN
11 31 n/a BEGIN
12 31 n/a BEGIN
84 225 Yes new
89 0 No __ANON__
89 0 No _parse_newick
89 0 No find_node
89 0 No get_leaf_nodes
89 0 No get_nodes
89 0 No get_root_node
89 0 No height
89 0 No id
89 0 No move_id_to_bootstrap
89 0 No number_nodes
89 0 No remove_Node
89 0 No reroot
89 0 No score
89 0 No set_root
89 0 No splice
89 0 n/a total_branch_length
89 0 n/a verbose
96 31 n/a BEGIN
116 0 Yes new_from_bioperl
153 0 n/a _recurse
185 9 n/a _analyze
252 1 Yes get_midpoint
302 151 Yes get_terminals
307 4241 n/a __ANON__
317 0 n/a __ANON__
349 13 Yes get_internals
368 1 Yes get_cherries
402 0 Yes get_all_rootings
410 0 n/a __ANON__
447 1716 Yes get_root
494 0 Yes get_ntax
515 3 Yes get_tallest_tip
553 5 Yes get_nodes_for_taxa
589 0 Yes get_mrca
638 2 Yes is_binary
641 33 n/a __ANON__
676 46 Yes is_ultrametric
681 878 n/a __ANON__
725 2 Yes is_monophyletic
760 0 Yes is_paraphyletic
797 3 Yes is_clade
840 1 Yes is_cladogram
894 1 Yes calc_branch_length_distance
915 2 Yes calc_branch_length_score
948 23 n/a _calc_branch_diffs
955 46 n/a __ANON__
1056 40 Yes calc_tree_length
1059 628 n/a __ANON__
1087 3 Yes calc_tree_height
1108 1 Yes calc_number_of_nodes
1129 43 Yes calc_number_of_terminals
1150 5 Yes calc_number_of_internals
1172 1 Yes calc_number_of_cherries
1204 4 Yes calc_total_paths
1230 1 Yes calc_redundancy
1256 6 Yes calc_imbalance
1262 119 n/a __ANON__
1311 0 Yes calc_i2
1384 0 Yes calc_gamma
1474 1 Yes calc_fiala_stemminess
1521 3 Yes calc_rohlf_stemminess
1587 4 Yes calc_resolution
1616 6 Yes calc_branching_times
1627 125 n/a __ANON__
1669 3 Yes calc_waiting_times
1698 1 Yes calc_node_ages
1701 5 n/a __ANON__
1736 2 Yes calc_ltt
1773 21 Yes calc_symdiff
1802 0 Yes calc_avtd
1829 0 Yes calc_fp
1868 0 Yes calc_fp_mean
1889 0 Yes calc_es
1923 0 Yes calc_es_mean
1944 0 Yes calc_pe
1965 0 Yes calc_pe_mean
1986 0 Yes calc_shapley
2036 0 n/a _calc_shapley_traverse
2090 0 Yes calc_shapley_mean
2158 143 Yes visit_depth_first
2206 0 Yes visit_breadth_first
2227 3 Yes visit_level_order
2260 1 Yes chronompl
2263 7 n/a __ANON__
2303 0 Yes grafenbl
2307 0 n/a __ANON__
2326 0 n/a __ANON__
2356 2 Yes agetobl
2391 0 Yes rankprobbl
2436 1 Yes ultrametricize
2474 1 Yes scale
2504 2 Yes resolve
2558 0 Yes replicate
2586 0 n/a __ANON__
2601 0 n/a __ANON__
2602 0 n/a __ANON__
2616 0 n/a __ANON__
2638 0 n/a __ANON__
2697 0 n/a _make_taxon_name
2740 0 Yes generize
2819 10 Yes prune_tips
2845 24 n/a _get_tip_objects
2889 14 Yes keep_tips
2914 258 n/a __ANON__
2961 3 Yes negative_to_zero
2986 2 Yes ladderize
2990 18 n/a __ANON__
3064 4 Yes sort_tips
3075 34 n/a __ANON__
3111 0 Yes exponentiate
3138 0 Yes multiply
3143 0 n/a __ANON__
3166 0 Yes log_transform
3203 6 Yes remove_unbranched_internals
3207 989 n/a __ANON__
3285 0 Yes remove_orphans
3291 0 n/a __ANON__
3298 0 n/a __ANON__
3326 0 Yes deroot
3389 2 Yes clone
3394 0 n/a __ANON__
3395 0 n/a __ANON__
3399 0 n/a __ANON__
3438 0 Yes to_nexus
3459 25 Yes to_newick
3479 0 Yes to_xml
3512 0 Yes to_svg
3531 0 Yes to_dom
3567 0 n/a _consolidate
3569 0 n/a __ANON__
3587 451 n/a _container
3602 33007 n/a _type
3603 2 n/a _tag