Subroutine Coverage

blib/lib/Bio/Phylo/Forest/NodeRole.pm
Criterion Covered Total %
subroutine 69 100 69.0
pod 58 77 75.3


line count pod subroutine
2 34 n/a BEGIN
3 34 n/a BEGIN
4 34 n/a BEGIN
5 34 n/a BEGIN
6 34 n/a BEGIN
7 34 n/a BEGIN
8 34 n/a BEGIN
9 34 n/a BEGIN
10 34 n/a BEGIN
11 34 n/a BEGIN
12 34 n/a BEGIN
13 34 n/a BEGIN
112 10786 Yes new
136 0 No add_Descendent
136 0 No add_tag_value
136 0 No ancestor
136 0 No bootstrap
136 0 No branch_length
136 0 No depth
136 0 No descendent_count
136 0 No description
136 0 No each_Descendent
136 0 No get_all_Descendents
136 0 No get_all_tags
136 0 No get_tag_values
136 0 No has_tag
136 0 No height
136 0 No id
136 0 No id_output
136 0 No internal_id
136 0 No invalidate_height
136 0 No remove_all_tags
136 0 n/a remove_tag
140 34 n/a BEGIN
170 0 Yes new_from_bioperl
212 362 Yes prune_child
235 116 Yes collapse
288 336 Yes set_first_daughter
310 336 Yes set_last_daughter
332 237 Yes set_previous_sister
368 237 Yes set_next_sister
400 0 Yes set_node_below
441 9 Yes set_root_below
544 45196 Yes get_first_daughter
561 22 Yes get_last_daughter
578 230 Yes get_previous_sister
605 7334 Yes get_next_sister
634 71 Yes get_ancestors
663 3 Yes get_root
688 3 Yes get_farthest_node
724 2 Yes get_sisters
748 45223 Yes get_child
771 540 Yes get_descendants
804 6656 n/a _desc
832 530 Yes get_terminals
857 1 Yes get_internals
886 40 Yes get_mrca
919 4 Yes get_leftmost_terminal
949 4 Yes get_rightmost_terminal
977 0 Yes get_subtree
981 0 n/a __ANON__
995 0 n/a __ANON__
1027 1904 Yes get_subtrees
1098 35202 Yes is_terminal
1118 145 Yes is_internal
1137 9 Yes is_preterminal
1162 0 Yes is_first
1182 0 Yes is_last
1201 486 Yes is_root
1222 10804 Yes is_descendant_of
1255 10803 Yes is_ancestor_of
1282 4 Yes is_sister_of
1314 11109 Yes is_child_of
1342 2 Yes is_outgroup_of
1374 22135 Yes can_contain
1404 81 Yes calc_path_to_root
1438 2 Yes calc_nodes_to_root
1469 1 Yes calc_max_nodes_to_tips
1501 2 Yes calc_min_nodes_to_tips
1533 2 Yes calc_max_path_to_tips
1568 2 Yes calc_min_path_to_tips
1606 19 Yes calc_patristic_distance
1643 9 Yes calc_nodal_distance
1672 236 Yes calc_terminals
1674 1172 n/a __ANON__
1696 358 Yes calc_rankprob_tipcounts
1759 76 Yes calc_rankprob
1815 8 Yes calc_expected_rank
1845 56 Yes calc_rankprob_compare
1956 143 Yes visit_depth_first
1984 4229 n/a _visit_depth_first
2059 0 Yes visit_breadth_first
2074 0 n/a _visit_breadth_first
2113 360 Yes visit_level_order
2150 0 Yes to_xml
2214 2804 Yes to_newick
2336 0 Yes to_dom
2403 67279 n/a _type
2404 2 n/a _tag
2419 21910 n/a _container